Wall clock time and date at job start Sun Mar 29 2020 21:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00240 * 2 1 4 4 C 1.50697 * 109.47075 * 293.94896 * 3 2 1 5 5 H 1.08000 * 120.00218 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00139 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00171 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99665 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47404 * 89.99964 * 8 6 4 10 10 H 1.48505 * 109.46792 * 209.99588 * 8 6 4 11 11 H 1.48500 * 109.47182 * 329.99651 * 8 6 4 12 12 C 1.39158 * 110.99691 * 123.95207 * 2 1 3 13 13 N 1.32358 * 119.71657 * 236.04377 * 12 2 1 14 14 C 1.31984 * 121.64565 * 179.97438 * 13 12 2 15 15 C 1.38025 * 120.89933 * 0.02562 * 14 13 12 16 16 C 1.38860 * 119.34512 * 359.97438 * 15 14 13 17 17 C 1.38491 * 118.48426 * 359.97438 * 16 15 14 18 18 F 1.35097 * 120.47044 * 180.02562 * 17 16 15 19 19 H 1.08999 * 109.47146 * 296.04753 * 1 2 3 20 20 H 1.09003 * 109.46256 * 56.04766 * 1 2 3 21 21 H 1.08996 * 109.47176 * 176.04500 * 1 2 3 22 22 H 1.09004 * 109.47094 * 53.94985 * 3 2 1 23 23 H 1.09002 * 109.47289 * 173.95021 * 3 2 1 24 24 H 0.97002 * 119.99610 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.54562 * 179.97438 * 14 13 12 26 26 H 1.08003 * 120.32928 * 180.02562 * 15 14 13 27 27 H 1.07999 * 120.76007 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2985 5 1 1.0742 1.5114 -2.0485 6 6 2.0270 3.3494 -1.5285 7 7 1.7138 3.9392 -2.6615 8 14 3.0002 4.2761 -0.2309 9 1 4.4525 4.0636 -0.4557 10 1 2.6920 5.7259 -0.3227 11 1 2.6294 3.7755 1.1171 12 6 1.9676 -0.7256 1.0777 13 7 2.8022 -0.1483 1.9275 14 6 3.2976 -0.8004 2.9625 15 6 2.9609 -2.1182 3.1972 16 6 2.0882 -2.7624 2.3303 17 6 1.5833 -2.0529 1.2534 18 9 0.7310 -2.6401 0.3852 19 1 -0.3633 0.4513 0.9233 20 1 -0.3632 0.5740 -0.8525 21 1 -0.3633 -1.0252 -0.0709 22 1 1.5611 1.9274 0.8309 23 1 3.0798 1.3444 0.1083 24 1 1.9885 4.8553 -2.8235 25 1 3.9764 -0.2962 3.6344 26 1 3.3714 -2.6429 4.0473 27 1 1.8090 -3.7930 2.4925 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054700385.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:53 Heat of formation + Delta-G solvation = 10.077575 kcal Electronic energy + Delta-G solvation = -13620.419336 eV Core-core repulsion = 11100.561486 eV Total energy + Delta-G solvation = -2519.857850 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.66774 -40.00066 -36.58687 -32.58101 -31.99893 -29.95586 -28.01513 -25.44349 -23.60487 -22.42272 -20.55874 -17.55599 -17.02291 -16.95507 -16.17390 -15.61098 -14.58604 -14.37737 -14.27432 -13.72939 -13.28610 -12.94904 -12.66096 -12.34161 -12.29050 -11.61847 -11.08955 -10.66580 -10.54970 -10.01206 -9.79841 -9.45640 -9.28429 -8.98271 -8.58027 -7.49496 -6.08138 -4.07359 1.19441 1.32477 3.31730 3.38156 3.45212 3.79592 4.03809 4.42626 4.53373 4.69931 4.86961 5.09170 5.24806 5.40769 5.76831 5.93109 5.96179 5.99004 6.07054 6.49305 6.64898 6.86309 6.95005 7.47100 7.48581 7.82095 8.26519 8.54970 8.96629 9.52198 11.04274 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.042602 B = 0.009962 C = 0.008304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.084393 B = 2809.921467 C = 3371.092383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.463 5.463 3 C 0.172 3.828 4 C -0.523 4.523 5 H 0.081 0.919 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.262 1.262 12 C 0.307 3.693 13 N -0.497 5.497 14 C 0.118 3.882 15 C -0.197 4.197 16 C -0.089 4.089 17 C 0.016 3.984 18 F -0.128 7.128 19 H 0.029 0.971 20 H 0.097 0.903 21 H 0.071 0.929 22 H 0.008 0.992 23 H 0.042 0.958 24 H 0.265 0.735 25 H 0.158 0.842 26 H 0.137 0.863 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -11.075 11.960 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.177 5.177 3 C 0.047 3.953 4 C -0.561 4.561 5 H 0.099 0.901 6 C -0.129 4.129 7 N -0.536 5.536 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.187 1.187 12 C 0.071 3.929 13 N -0.211 5.211 14 C -0.041 4.041 15 C -0.219 4.219 16 C -0.116 4.116 17 C -0.009 4.009 18 F -0.107 7.107 19 H 0.048 0.952 20 H 0.116 0.884 21 H 0.089 0.911 22 H 0.026 0.974 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.175 0.825 26 H 0.155 0.845 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.967 -10.204 11.155 15.148 hybrid contribution 0.092 -0.094 1.123 1.131 sum 1.060 -10.297 12.278 16.059 Atomic orbital electron populations 1.22529 0.83979 1.02613 1.02593 1.58989 1.09107 1.18636 1.30995 1.20200 0.96488 0.81028 0.97563 1.21039 1.36533 0.97636 1.00865 0.90066 1.24827 0.95538 0.97183 0.95356 1.69891 1.46537 1.13342 1.23827 0.86855 0.80991 0.79027 0.83028 1.20001 1.21206 1.18676 1.20472 0.93210 0.90358 0.88812 1.67929 1.12410 1.37364 1.03410 1.22652 0.96167 0.91648 0.93587 1.21765 1.01759 0.96562 1.01832 1.21417 0.96559 1.00496 0.93087 1.18150 0.97838 0.92118 0.92818 1.91428 1.67707 1.83542 1.67985 0.95209 0.88400 0.91076 0.97422 0.94010 0.92533 0.82519 0.84525 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.03 60.07 0.54 1.11 15 2 N -0.46 -10.48 4.73 -182.34 -0.86 -11.34 15 3 C 0.17 4.38 3.05 -4.98 -0.02 4.36 15 4 C -0.52 -15.07 9.01 -34.44 -0.31 -15.38 15 5 H 0.08 2.51 7.37 -52.49 -0.39 2.12 15 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 15 7 N -0.90 -27.56 13.96 55.43 0.77 -26.78 15 8 Si 0.87 21.89 27.47 -169.99 -4.67 17.22 15 9 H -0.27 -6.79 7.11 56.52 0.40 -6.39 15 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 11 H -0.26 -6.42 6.54 56.52 0.37 -6.05 15 12 C 0.31 6.12 6.41 -154.84 -0.99 5.13 15 13 N -0.50 -9.56 8.61 -12.36 -0.11 -9.67 15 14 C 0.12 1.68 11.17 -17.56 -0.20 1.48 15 15 C -0.20 -2.32 10.10 -39.43 -0.40 -2.72 15 16 C -0.09 -1.15 10.15 -39.26 -0.40 -1.55 15 17 C 0.02 0.27 7.00 -39.09 -0.27 -0.01 15 18 F -0.13 -2.18 14.80 2.25 0.03 -2.15 15 19 H 0.03 0.56 8.14 -51.93 -0.42 0.13 15 20 H 0.10 2.05 6.76 -51.93 -0.35 1.70 15 21 H 0.07 1.25 5.72 -51.93 -0.30 0.95 15 22 H 0.01 0.21 7.18 -51.93 -0.37 -0.17 15 23 H 0.04 1.10 6.95 -51.93 -0.36 0.74 15 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 25 H 0.16 1.71 8.06 -52.49 -0.42 1.29 15 26 H 0.14 1.10 8.06 -52.48 -0.42 0.67 15 27 H 0.14 1.37 8.06 -52.49 -0.42 0.95 15 LS Contribution 236.32 15.07 3.56 3.56 Total: -1.00 -32.06 236.32 -6.04 -38.09 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -2.63 Total: -3.41 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -2.14 Total: -5.53 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.20 Total: -47.79 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.03 Total: -2.15 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.06 -6.04 -38.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054700385.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.169 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds