Wall clock time and date at job start Sun Mar 29 2020 21:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00240 * 2 1 4 4 C 1.50697 * 109.47075 * 293.94896 * 3 2 1 5 5 H 1.08000 * 120.00218 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00139 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00171 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99665 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47404 * 89.99964 * 8 6 4 10 10 H 1.48505 * 109.46792 * 209.99588 * 8 6 4 11 11 H 1.48500 * 109.47182 * 329.99651 * 8 6 4 12 12 C 1.39158 * 110.99691 * 123.95207 * 2 1 3 13 13 N 1.32358 * 119.71657 * 236.04377 * 12 2 1 14 14 C 1.31984 * 121.64565 * 179.97438 * 13 12 2 15 15 C 1.38025 * 120.89933 * 0.02562 * 14 13 12 16 16 C 1.38860 * 119.34512 * 359.97438 * 15 14 13 17 17 C 1.38491 * 118.48426 * 359.97438 * 16 15 14 18 18 F 1.35097 * 120.47044 * 180.02562 * 17 16 15 19 19 H 1.08999 * 109.47146 * 296.04753 * 1 2 3 20 20 H 1.09003 * 109.46256 * 56.04766 * 1 2 3 21 21 H 1.08996 * 109.47176 * 176.04500 * 1 2 3 22 22 H 1.09004 * 109.47094 * 53.94985 * 3 2 1 23 23 H 1.09002 * 109.47289 * 173.95021 * 3 2 1 24 24 H 0.97002 * 119.99610 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.54562 * 179.97438 * 14 13 12 26 26 H 1.08003 * 120.32928 * 180.02562 * 15 14 13 27 27 H 1.07999 * 120.76007 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2985 5 1 1.0742 1.5114 -2.0485 6 6 2.0270 3.3494 -1.5285 7 7 1.7138 3.9392 -2.6615 8 14 3.0002 4.2761 -0.2309 9 1 4.4525 4.0636 -0.4557 10 1 2.6920 5.7259 -0.3227 11 1 2.6294 3.7755 1.1171 12 6 1.9676 -0.7256 1.0777 13 7 2.8022 -0.1483 1.9275 14 6 3.2976 -0.8004 2.9625 15 6 2.9609 -2.1182 3.1972 16 6 2.0882 -2.7624 2.3303 17 6 1.5833 -2.0529 1.2534 18 9 0.7310 -2.6401 0.3852 19 1 -0.3633 0.4513 0.9233 20 1 -0.3632 0.5740 -0.8525 21 1 -0.3633 -1.0252 -0.0709 22 1 1.5611 1.9274 0.8309 23 1 3.0798 1.3444 0.1083 24 1 1.9885 4.8553 -2.8235 25 1 3.9764 -0.2962 3.6344 26 1 3.3714 -2.6429 4.0473 27 1 1.8090 -3.7930 2.4925 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054700385.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:53 Heat of formation + Delta-G solvation = -12.399169 kcal Electronic energy + Delta-G solvation = -13621.394001 eV Core-core repulsion = 11100.561486 eV Total energy + Delta-G solvation = -2520.832515 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.93529 -41.28580 -38.13048 -34.75306 -33.19382 -31.40134 -29.85646 -27.06969 -25.00615 -23.80428 -22.27594 -19.30385 -18.47723 -18.28170 -17.66423 -16.94478 -16.40833 -15.98933 -15.77174 -15.07185 -14.82654 -14.39499 -14.16944 -14.00718 -13.59347 -13.30325 -12.95709 -12.55479 -12.31934 -11.94617 -11.63274 -11.00434 -10.81996 -10.55882 -10.43172 -8.96262 -8.34095 -6.39257 0.01708 0.20367 1.33569 1.34075 1.48010 2.31677 2.55034 2.75879 2.99416 3.25472 3.53633 3.81044 4.06455 4.19276 4.37047 4.49839 4.74419 4.78955 4.84315 4.91813 5.04727 5.07633 5.41341 5.57000 5.73944 6.04270 6.47044 6.63969 7.00505 7.25163 8.81812 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.042602 B = 0.009962 C = 0.008304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.084393 B = 2809.921467 C = 3371.092383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.490 5.490 3 C 0.195 3.805 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.017 3.983 7 N -0.941 5.941 8 Si 0.945 3.055 9 H -0.266 1.266 10 H -0.275 1.275 11 H -0.254 1.254 12 C 0.266 3.734 13 N -0.536 5.536 14 C 0.107 3.893 15 C -0.164 4.164 16 C -0.077 4.077 17 C 0.001 3.999 18 F -0.135 7.135 19 H 0.033 0.967 20 H 0.072 0.928 21 H 0.091 0.909 22 H -0.001 1.001 23 H 0.032 0.968 24 H 0.270 0.730 25 H 0.190 0.810 26 H 0.190 0.810 27 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 -12.636 15.197 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.205 5.205 3 C 0.069 3.931 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.181 4.181 7 N -0.581 5.581 8 Si 0.769 3.231 9 H -0.191 1.191 10 H -0.201 1.201 11 H -0.178 1.178 12 C 0.033 3.967 13 N -0.251 5.251 14 C -0.051 4.051 15 C -0.185 4.185 16 C -0.103 4.103 17 C -0.023 4.023 18 F -0.114 7.114 19 H 0.052 0.948 20 H 0.091 0.909 21 H 0.110 0.890 22 H 0.017 0.983 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.207 0.793 26 H 0.207 0.793 27 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.325 -11.799 14.409 18.768 hybrid contribution -0.313 0.232 0.225 0.450 sum 2.012 -11.567 14.633 18.761 Atomic orbital electron populations 1.22446 0.83537 1.03416 1.01567 1.58965 1.10013 1.17050 1.34474 1.19716 0.95683 0.82870 0.94875 1.21255 1.35979 0.98017 1.01675 0.93920 1.25737 0.96602 0.98133 0.97648 1.70027 1.48019 1.14034 1.26008 0.85735 0.79471 0.77761 0.80174 1.19070 1.20055 1.17789 1.20432 0.95275 0.91374 0.89596 1.67803 1.12933 1.39422 1.04956 1.23351 0.96165 0.93128 0.92484 1.22347 0.98968 0.95285 1.01871 1.21941 0.95283 1.01981 0.91089 1.18381 0.98446 0.91434 0.94078 1.91400 1.68066 1.83394 1.68574 0.94824 0.90914 0.89037 0.98318 0.94978 0.92114 0.79293 0.79273 0.80068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.49 9.03 127.69 1.15 2.65 15 2 N -0.49 -22.84 4.73 -730.79 -3.46 -26.30 15 3 C 0.19 10.20 3.05 85.56 0.26 10.46 15 4 C -0.53 -32.06 9.01 25.60 0.23 -31.83 15 5 H 0.04 2.82 7.37 -2.91 -0.02 2.80 15 6 C 0.02 1.03 5.47 84.66 0.46 1.50 15 7 N -0.94 -59.60 13.96 21.45 0.30 -59.30 15 8 Si 0.95 45.80 27.47 68.60 1.88 47.68 15 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 11 H -0.25 -11.86 6.54 99.48 0.65 -11.21 15 12 C 0.27 10.52 6.41 133.06 0.85 11.37 15 13 N -0.54 -19.91 8.61 -193.03 -1.66 -21.57 15 14 C 0.11 2.63 11.17 84.62 0.95 3.57 15 15 C -0.16 -2.92 10.10 22.37 0.23 -2.69 15 16 C -0.08 -1.63 10.15 22.48 0.23 -1.41 15 17 C 0.00 0.04 7.00 22.59 0.16 0.20 15 18 F -0.14 -4.49 14.80 44.97 0.67 -3.82 15 19 H 0.03 1.31 8.14 -2.39 -0.02 1.29 15 20 H 0.07 3.29 6.76 -2.39 -0.02 3.27 15 21 H 0.09 3.32 5.72 -2.39 -0.01 3.30 15 22 H 0.00 -0.05 7.18 -2.39 -0.02 -0.07 15 23 H 0.03 1.72 6.95 -2.39 -0.02 1.71 15 24 H 0.27 15.83 8.31 -92.71 -0.77 15.06 15 25 H 0.19 3.25 8.06 -2.91 -0.02 3.22 15 26 H 0.19 1.48 8.06 -2.91 -0.02 1.46 15 27 H 0.18 2.41 8.06 -2.91 -0.02 2.39 15 Total: -1.00 -73.41 236.32 3.37 -70.04 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: 1.12 Total: -0.54 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 4.52 Total: -6.19 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -4.82 Total: -107.17 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.67 Total: -3.82 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.68 kcal Total: -73.41 3.37 -70.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054700385.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.642 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds