Wall clock time and date at job start Sun Mar 29 2020 21:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 C 1.53001 * 109.47159 * 120.00132 * 2 1 3 5 5 C 1.50700 * 109.47058 * 174.99817 * 4 2 1 6 6 N 1.30271 * 126.28485 * 90.02420 * 5 4 2 7 7 N 1.28667 * 109.38447 * 179.97438 * 6 5 4 8 8 C 1.30269 * 109.37908 * 0.02562 * 7 6 5 9 9 C 1.50703 * 126.28137 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 90.02262 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 O 1.34365 * 126.28030 * 270.31194 * 5 4 2 19 19 H 1.09005 * 109.47054 * 299.99920 * 1 2 3 20 20 H 1.09000 * 109.47259 * 59.99755 * 1 2 3 21 21 H 1.08997 * 109.47398 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47054 * 240.00079 * 2 1 3 23 23 H 1.09004 * 109.47581 * 60.00298 * 3 2 1 24 24 H 1.09000 * 109.47163 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47683 * 299.99942 * 3 2 1 26 26 H 1.09006 * 109.46981 * 55.00037 * 4 2 1 27 27 H 1.08995 * 109.46996 * 294.99879 * 4 2 1 28 28 H 1.09002 * 109.47152 * 330.02355 * 9 8 7 29 29 H 1.09001 * 109.46980 * 210.02455 * 9 8 7 30 30 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1888 6 7 4.3966 0.0362 1.6550 7 7 5.5927 -0.3805 1.4290 8 6 5.5419 -1.5259 0.8106 9 6 6.7210 -2.3511 0.3635 10 6 7.1153 -3.3016 1.4645 11 1 6.5667 -3.3079 2.3947 12 6 8.1758 -4.1640 1.2838 13 7 8.8436 -4.1567 0.1508 14 14 8.6640 -5.3427 2.6482 15 1 7.5219 -6.2391 2.9603 16 1 9.8260 -6.1557 2.2077 17 1 9.0327 -4.5699 3.8616 18 8 4.2453 -1.8339 0.6395 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6054 -1.7199 1.2951 27 1 1.7517 -0.1584 2.1369 28 1 7.5591 -1.6929 0.1343 29 1 6.4506 -2.9186 -0.5270 30 1 9.5899 -4.7632 0.0239 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058519326.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:04 Heat of formation + Delta-G solvation = 6.434597 kcal Electronic energy + Delta-G solvation = -13493.897660 eV Core-core repulsion = 11097.342144 eV Total energy + Delta-G solvation = -2396.555517 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.39683 -36.66047 -35.32139 -33.67526 -31.48411 -29.10534 -27.23625 -26.54335 -23.85868 -22.06891 -21.28255 -20.21061 -17.02351 -16.31330 -16.06232 -15.46625 -14.84253 -14.34230 -14.03488 -13.39334 -12.73218 -12.44926 -12.35357 -12.08883 -11.75208 -11.61821 -11.33612 -11.11281 -11.06605 -10.90432 -10.81627 -10.80804 -10.30247 -10.00715 -9.80291 -8.61834 -8.54959 -6.24988 -4.30999 1.97303 3.05961 3.19359 3.25541 3.29257 3.34422 4.30249 4.47636 4.73181 4.79234 5.03639 5.11032 5.28991 5.43540 5.54735 5.59023 5.66590 5.77118 5.81531 5.96690 6.09911 6.20146 6.28354 6.34772 6.56271 7.11823 7.20788 7.68142 7.92536 8.68965 9.14393 9.33754 10.85294 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.063019 B = 0.006304 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.206365 B = 4440.617785 C = 4523.621627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.012 4.012 5 C 0.121 3.879 6 N -0.289 5.289 7 N -0.321 5.321 8 C 0.222 3.778 9 C 0.104 3.896 10 C -0.525 4.525 11 H 0.060 0.940 12 C 0.066 3.934 13 N -0.889 5.889 14 Si 0.907 3.093 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.273 1.273 18 O -0.229 6.229 19 H 0.058 0.942 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.916 5.124 -0.927 14.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.051 4.051 5 C -0.091 4.091 6 N -0.136 5.136 7 N -0.166 5.166 8 C 0.013 3.987 9 C 0.066 3.934 10 C -0.564 4.564 11 H 0.078 0.922 12 C -0.137 4.137 13 N -0.526 5.526 14 Si 0.734 3.266 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.198 1.198 18 O -0.109 6.109 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.093 0.907 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.264 6.106 -0.458 14.609 hybrid contribution -0.075 -1.709 0.161 1.718 sum -13.339 4.397 -0.297 14.048 Atomic orbital electron populations 1.21812 0.94190 1.02000 1.02157 1.21136 0.96019 0.97009 0.97260 1.21876 1.02127 0.95029 1.01619 1.20117 0.81599 1.02894 1.00442 1.27559 0.98111 0.85040 0.98431 1.74207 0.95598 1.24882 1.18922 1.74391 1.13661 1.10845 1.17726 1.29489 0.83140 0.92922 0.93158 1.18172 0.84101 0.93027 0.98113 1.20786 1.16026 1.19331 1.00273 0.92175 1.24936 0.95534 0.97061 0.96189 1.69915 1.20618 1.37913 1.24173 0.86400 0.78115 0.80422 0.81676 1.19980 1.20864 1.19838 1.84810 1.19814 1.44265 1.62049 0.92315 0.92270 0.92402 0.90732 0.92260 0.92028 0.92780 0.89060 0.87900 0.91182 0.92923 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.19 37.16 0.34 -0.84 16 2 C -0.09 -1.05 2.91 -90.62 -0.26 -1.31 16 3 C -0.15 -1.75 9.00 37.15 0.33 -1.41 16 4 C -0.01 -0.15 5.32 -27.88 -0.15 -0.30 16 5 C 0.12 2.25 6.94 -12.94 -0.09 2.16 16 6 N -0.29 -6.17 11.53 32.55 0.38 -5.80 16 7 N -0.32 -7.76 12.22 32.55 0.40 -7.36 16 8 C 0.22 5.33 7.67 -12.94 -0.10 5.23 16 9 C 0.10 2.68 5.60 -29.03 -0.16 2.52 16 10 C -0.53 -14.66 9.09 -34.44 -0.31 -14.97 16 11 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 12 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 13 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 14 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 O -0.23 -4.98 10.87 5.37 0.06 -4.92 16 19 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 20 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.91 6.84 -51.93 -0.36 0.55 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 29 H 0.05 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 264.27 15.07 3.98 3.98 Total: -1.00 -30.25 264.27 -4.09 -34.34 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: -4.12 Total: -4.69 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -0.50 Total: -7.19 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 1.51 Total: -37.64 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: 0.06 Total: -4.92 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.25 -4.09 -34.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058519326.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.773 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds