Wall clock time and date at job start Sun Mar 29 2020 21:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 C 1.53001 * 109.47159 * 120.00132 * 2 1 3 5 5 C 1.50700 * 109.47058 * 174.99817 * 4 2 1 6 6 N 1.30271 * 126.28485 * 90.02420 * 5 4 2 7 7 N 1.28667 * 109.38447 * 179.97438 * 6 5 4 8 8 C 1.30269 * 109.37908 * 0.02562 * 7 6 5 9 9 C 1.50703 * 126.28137 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 90.02262 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 O 1.34365 * 126.28030 * 270.31194 * 5 4 2 19 19 H 1.09005 * 109.47054 * 299.99920 * 1 2 3 20 20 H 1.09000 * 109.47259 * 59.99755 * 1 2 3 21 21 H 1.08997 * 109.47398 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47054 * 240.00079 * 2 1 3 23 23 H 1.09004 * 109.47581 * 60.00298 * 3 2 1 24 24 H 1.09000 * 109.47163 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47683 * 299.99942 * 3 2 1 26 26 H 1.09006 * 109.46981 * 55.00037 * 4 2 1 27 27 H 1.08995 * 109.46996 * 294.99879 * 4 2 1 28 28 H 1.09002 * 109.47152 * 330.02355 * 9 8 7 29 29 H 1.09001 * 109.46980 * 210.02455 * 9 8 7 30 30 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1888 6 7 4.3966 0.0362 1.6550 7 7 5.5927 -0.3805 1.4290 8 6 5.5419 -1.5259 0.8106 9 6 6.7210 -2.3511 0.3635 10 6 7.1153 -3.3016 1.4645 11 1 6.5667 -3.3079 2.3947 12 6 8.1758 -4.1640 1.2838 13 7 8.8436 -4.1567 0.1508 14 14 8.6640 -5.3427 2.6482 15 1 7.5219 -6.2391 2.9603 16 1 9.8260 -6.1557 2.2077 17 1 9.0327 -4.5699 3.8616 18 8 4.2453 -1.8339 0.6395 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6054 -1.7199 1.2951 27 1 1.7517 -0.1584 2.1369 28 1 7.5591 -1.6929 0.1343 29 1 6.4506 -2.9186 -0.5270 30 1 9.5899 -4.7632 0.0239 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058519326.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:03 Heat of formation + Delta-G solvation = -15.836903 kcal Electronic energy + Delta-G solvation = -13494.863425 eV Core-core repulsion = 11097.342144 eV Total energy + Delta-G solvation = -2397.521281 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.12138 -37.64302 -37.06616 -35.70904 -33.25337 -30.71903 -28.23221 -27.88426 -25.84372 -23.61693 -23.11389 -21.18251 -18.98911 -17.96143 -17.92706 -16.77324 -16.59753 -15.54081 -15.17009 -14.99209 -14.40784 -13.91706 -13.68042 -13.37964 -13.14418 -13.04350 -12.87725 -12.78179 -12.66925 -12.21787 -12.17844 -11.95278 -11.78641 -11.75873 -11.63957 -10.72060 -10.29501 -8.35139 -6.50201 0.30121 1.37493 1.42902 1.43989 1.47468 1.53195 2.35787 2.98699 3.03866 3.60280 3.81795 3.88565 4.09375 4.24495 4.49438 4.59447 4.67019 4.75575 4.82926 4.88141 5.00430 5.01430 5.09993 5.15133 5.23263 5.40228 5.45906 5.53064 5.82746 6.53838 7.18912 7.40674 8.75523 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.063019 B = 0.006304 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.206365 B = 4440.617785 C = 4523.621627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.015 4.015 5 C 0.148 3.852 6 N -0.314 5.314 7 N -0.339 5.339 8 C 0.204 3.796 9 C 0.114 3.886 10 C -0.549 4.549 11 H 0.052 0.948 12 C 0.021 3.979 13 N -0.917 5.917 14 Si 0.974 3.026 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.271 1.271 18 O -0.236 6.236 19 H 0.071 0.929 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.024 0.976 25 H 0.068 0.932 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.834 4.669 -0.166 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 C -0.206 4.206 4 C -0.053 4.053 5 C -0.064 4.064 6 N -0.159 5.159 7 N -0.185 5.185 8 C -0.007 4.007 9 C 0.075 3.925 10 C -0.588 4.588 11 H 0.070 0.930 12 C -0.180 4.180 13 N -0.555 5.555 14 Si 0.797 3.203 15 H -0.190 1.190 16 H -0.196 1.196 17 H -0.196 1.196 18 O -0.116 6.116 19 H 0.090 0.910 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.135 0.865 27 H 0.144 0.856 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.198 5.675 0.302 16.225 hybrid contribution 0.407 -1.486 -0.110 1.544 sum -14.791 4.189 0.191 15.374 Atomic orbital electron populations 1.21766 0.91209 1.03126 1.03316 1.21142 0.98276 0.95919 0.95709 1.21884 0.99680 0.96060 1.03019 1.20659 0.77204 1.05142 1.02341 1.28882 1.00016 0.82816 0.94697 1.74160 0.95081 1.25833 1.20872 1.74318 1.15477 1.10935 1.17769 1.28955 0.83727 0.93237 0.94784 1.17833 0.84573 0.92541 0.97532 1.21015 1.16779 1.20469 1.00513 0.93018 1.25807 0.95125 0.98475 0.98598 1.70005 1.20965 1.38634 1.25848 0.85365 0.78235 0.78220 0.78459 1.19050 1.19621 1.19615 1.84804 1.19098 1.45224 1.62495 0.90981 0.91355 0.91327 0.91952 0.91107 0.95707 0.91264 0.86537 0.85606 0.92893 0.93664 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.19 71.98 0.66 -1.05 16 2 C -0.09 -1.78 2.91 -10.80 -0.03 -1.81 16 3 C -0.15 -3.24 9.00 71.98 0.65 -2.59 16 4 C -0.02 -0.34 5.32 29.85 0.16 -0.18 16 5 C 0.15 5.39 6.94 88.34 0.61 6.00 16 6 N -0.31 -13.44 11.53 -165.50 -1.91 -15.34 16 7 N -0.34 -16.80 12.22 -165.50 -2.02 -18.82 16 8 C 0.20 10.04 7.67 88.34 0.68 10.71 16 9 C 0.11 6.08 5.60 29.10 0.16 6.24 16 10 C -0.55 -31.23 9.09 25.60 0.23 -31.00 16 11 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 12 C 0.02 1.15 5.46 84.66 0.46 1.61 16 13 N -0.92 -52.45 13.29 21.45 0.28 -52.17 16 14 Si 0.97 43.02 29.54 68.60 2.03 45.04 16 15 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 O -0.24 -10.26 10.87 -3.71 -0.04 -10.30 16 19 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 20 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 21 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.02 0.71 6.84 -2.39 -0.02 0.69 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.05 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -65.72 264.27 3.04 -62.67 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: 1.12 Total: 0.97 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 3.59 Total: -12.07 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -3.65 Total: -86.33 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.04 Total: -10.30 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -65.72 3.04 -62.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058519326.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.838 kcal (2) G-P(sol) polarization free energy of solvation -65.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds