Wall clock time and date at job start Sun Mar 29 2020 21:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00328 * 2 1 4 4 H 1.48494 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46547 * 299.99858 * 3 2 1 6 6 H 1.48501 * 109.47198 * 59.99669 * 3 2 1 7 7 C 1.38821 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99336 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64974 * 0.02562 * 9 7 2 11 11 C 1.54914 * 104.83311 * 155.82716 * 10 9 7 12 12 C 1.55154 * 101.57859 * 37.01410 * 11 10 9 13 13 H 1.08994 * 110.72846 * 82.86111 * 12 11 10 14 14 N 1.46905 * 110.71668 * 206.13785 * 12 11 10 15 15 C 1.48541 * 110.99754 * 178.20540 * 14 12 11 16 16 C 1.54939 * 103.22213 * 159.71763 * 15 14 12 17 17 C 1.54592 * 102.92686 * 322.58245 * 16 15 14 18 18 C 1.47901 * 110.99508 * 295.59758 * 14 12 11 19 19 C 1.47026 * 125.64951 * 179.97438 * 9 7 2 20 20 H 0.97004 * 120.00140 * 359.97438 * 1 2 3 21 21 H 1.08996 * 110.36446 * 36.99348 * 10 9 7 22 22 H 1.08996 * 110.46250 * 274.71573 * 10 9 7 23 23 H 1.08998 * 111.00126 * 278.94123 * 11 10 9 24 24 H 1.08995 * 111.03393 * 155.09924 * 11 10 9 25 25 H 1.08996 * 110.66573 * 278.15023 * 15 14 12 26 26 H 1.08995 * 110.66797 * 41.28409 * 15 14 12 27 27 H 1.09005 * 110.71695 * 204.22442 * 16 15 14 28 28 H 1.09003 * 110.72468 * 80.94521 * 16 15 14 29 29 H 1.08999 * 110.31248 * 263.04880 * 17 16 15 30 30 H 1.08999 * 110.31006 * 140.87312 * 17 16 15 31 31 H 1.09001 * 109.92174 * 333.50888 * 18 14 12 32 32 H 1.08996 * 109.91421 * 94.61087 * 18 14 12 33 33 H 1.08997 * 109.88411 * 61.68566 * 19 9 7 34 34 H 1.08997 * 109.87626 * 300.51573 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1417 -2.5332 -0.0005 11 6 -0.4014 -3.9320 -0.6133 12 6 0.7781 -4.7524 -0.0277 13 1 0.5450 -5.0985 0.9791 14 7 1.1098 -5.8839 -0.9041 15 6 2.2663 -6.6487 -0.3712 16 6 2.1348 -8.0242 -1.0721 17 6 0.6059 -8.2505 -1.1055 18 6 -0.0115 -6.8458 -0.9748 19 6 1.9316 -3.7276 0.0005 20 1 -0.4850 0.8401 0.0004 21 1 -0.5989 -1.7586 -0.6161 22 1 -0.5299 -2.4866 1.0169 23 1 -0.3509 -3.8973 -1.7016 24 1 -1.3590 -4.3329 -0.2812 25 1 3.2049 -6.1662 -0.6437 26 1 2.1891 -6.7590 0.7104 27 1 2.6274 -8.8026 -0.4892 28 1 2.5408 -7.9825 -2.0828 29 1 0.2980 -8.8783 -0.2693 30 1 0.3116 -8.7067 -2.0507 31 1 -0.6098 -6.7863 -0.0656 32 1 -0.6332 -6.6280 -1.8432 33 1 2.5274 -3.8649 0.9029 34 1 2.5586 -3.8506 -0.8825 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061858176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:08 Heat of formation + Delta-G solvation = 30.902607 kcal Electronic energy + Delta-G solvation = -14341.221429 eV Core-core repulsion = 12081.560019 eV Total energy + Delta-G solvation = -2259.661409 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.00678 -36.47022 -32.75863 -30.67502 -29.24383 -28.36545 -26.48707 -24.19480 -21.48895 -20.99150 -19.64571 -19.38509 -16.83277 -16.10464 -15.59320 -14.59631 -14.33136 -13.77229 -13.42706 -12.91944 -12.54024 -12.22940 -12.00861 -11.57736 -11.38422 -11.23449 -11.08298 -10.85868 -10.78772 -10.52813 -10.16481 -10.08994 -9.95665 -9.72544 -9.47445 -8.59622 -8.09335 -6.76295 -5.59559 -3.00730 3.43531 3.48597 3.51466 4.23769 4.55922 4.78190 4.79362 5.03801 5.40975 5.45742 5.49798 5.58059 5.63859 5.80937 5.83699 5.87274 5.91317 5.97806 6.11000 6.16129 6.25638 6.42845 6.63688 6.66146 6.78183 6.79988 7.21373 7.54120 7.59722 7.69442 7.91983 8.42533 9.28156 9.89227 10.54926 11.44666 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.070669 B = 0.007193 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.118235 B = 3891.669266 C = 4188.694752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.014 4.014 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.133 4.133 12 C 0.062 3.938 13 H 0.042 0.958 14 N -0.506 5.506 15 C 0.034 3.966 16 C -0.123 4.123 17 C -0.131 4.131 18 C 0.038 3.962 19 C 0.148 3.852 20 H 0.251 0.749 21 H 0.107 0.893 22 H 0.009 0.991 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.015 0.985 34 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 -14.105 -1.151 14.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.172 4.172 12 C -0.046 4.046 13 H 0.060 0.940 14 N -0.231 5.231 15 C -0.094 4.094 16 C -0.161 4.161 17 C -0.169 4.169 18 C -0.090 4.090 19 C 0.021 3.979 20 H 0.062 0.938 21 H 0.125 0.875 22 H 0.027 0.973 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.033 0.967 34 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.796 -13.646 -1.652 13.769 hybrid contribution 0.215 0.487 0.976 1.112 sum 1.012 -13.159 -0.676 13.216 Atomic orbital electron populations 1.69812 1.04904 1.24554 1.58017 1.24790 0.95732 0.97690 1.02671 0.85989 0.78643 0.83632 0.77209 1.20540 1.21745 1.21816 1.19139 0.90541 0.82447 1.42530 0.90454 1.44457 1.02008 0.99718 1.86831 1.21911 0.84761 0.92567 0.97998 1.23061 0.94960 0.98265 1.00930 1.22885 0.97880 0.90786 0.93090 0.94025 1.64837 1.03920 1.06973 1.47358 1.23215 0.95901 0.93306 0.97006 1.22476 0.95827 0.96586 1.01226 1.22402 0.95868 0.96859 1.01753 1.22792 0.94236 0.90925 1.01071 1.21196 0.93395 0.85516 0.97781 0.93844 0.87500 0.97258 0.91243 0.92935 0.90001 0.94094 0.91499 0.90873 0.91918 0.91300 0.94088 0.90556 0.96689 0.94787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.68 10.09 55.49 0.56 -27.12 16 2 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.22 -6.32 10.27 -15.06 -0.15 -6.47 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -16.33 3.39 -170.07 -0.58 -16.91 16 10 C 0.15 3.90 5.89 -2.52 -0.01 3.89 16 11 C -0.13 -2.73 6.08 -24.58 -0.15 -2.88 16 12 C 0.06 1.20 2.29 -65.87 -0.15 1.05 16 13 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 14 N -0.51 -8.34 5.07 -220.30 -1.12 -9.45 16 15 C 0.03 0.47 5.96 -1.89 -0.01 0.46 16 16 C -0.12 -1.38 7.06 -24.87 -0.18 -1.55 16 17 C -0.13 -1.43 6.93 -25.37 -0.18 -1.61 16 18 C 0.04 0.52 6.07 -2.75 -0.02 0.50 16 19 C 0.15 3.32 6.28 -3.06 -0.02 3.30 16 20 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 21 H 0.11 3.04 5.87 -51.93 -0.30 2.73 16 22 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 26 H 0.04 0.57 8.00 -51.93 -0.42 0.15 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.56 7.74 -51.93 -0.40 0.16 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.03 0.78 8.03 -51.93 -0.42 0.36 16 LS Contribution 266.97 15.07 4.02 4.02 Total: -1.00 -30.61 266.97 -8.83 -39.44 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -5.73 Total: -3.73 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -0.96 Total: -3.81 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -1.13 Total: -53.48 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.61 -8.83 -39.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061858176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.339 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds