Wall clock time and date at job start Sun Mar 29 2020 21:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00328 * 2 1 4 4 H 1.48494 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46547 * 299.99858 * 3 2 1 6 6 H 1.48501 * 109.47198 * 59.99669 * 3 2 1 7 7 C 1.38821 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99336 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64974 * 0.02562 * 9 7 2 11 11 C 1.54914 * 104.83311 * 155.82716 * 10 9 7 12 12 C 1.55154 * 101.57859 * 37.01410 * 11 10 9 13 13 H 1.08994 * 110.72846 * 82.86111 * 12 11 10 14 14 N 1.46905 * 110.71668 * 206.13785 * 12 11 10 15 15 C 1.48541 * 110.99754 * 178.20540 * 14 12 11 16 16 C 1.54939 * 103.22213 * 159.71763 * 15 14 12 17 17 C 1.54592 * 102.92686 * 322.58245 * 16 15 14 18 18 C 1.47901 * 110.99508 * 295.59758 * 14 12 11 19 19 C 1.47026 * 125.64951 * 179.97438 * 9 7 2 20 20 H 0.97004 * 120.00140 * 359.97438 * 1 2 3 21 21 H 1.08996 * 110.36446 * 36.99348 * 10 9 7 22 22 H 1.08996 * 110.46250 * 274.71573 * 10 9 7 23 23 H 1.08998 * 111.00126 * 278.94123 * 11 10 9 24 24 H 1.08995 * 111.03393 * 155.09924 * 11 10 9 25 25 H 1.08996 * 110.66573 * 278.15023 * 15 14 12 26 26 H 1.08995 * 110.66797 * 41.28409 * 15 14 12 27 27 H 1.09005 * 110.71695 * 204.22442 * 16 15 14 28 28 H 1.09003 * 110.72468 * 80.94521 * 16 15 14 29 29 H 1.08999 * 110.31248 * 263.04880 * 17 16 15 30 30 H 1.08999 * 110.31006 * 140.87312 * 17 16 15 31 31 H 1.09001 * 109.92174 * 333.50888 * 18 14 12 32 32 H 1.08996 * 109.91421 * 94.61087 * 18 14 12 33 33 H 1.08997 * 109.88411 * 61.68566 * 19 9 7 34 34 H 1.08997 * 109.87626 * 300.51573 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1417 -2.5332 -0.0005 11 6 -0.4014 -3.9320 -0.6133 12 6 0.7781 -4.7524 -0.0277 13 1 0.5450 -5.0985 0.9791 14 7 1.1098 -5.8839 -0.9041 15 6 2.2663 -6.6487 -0.3712 16 6 2.1348 -8.0242 -1.0721 17 6 0.6059 -8.2505 -1.1055 18 6 -0.0115 -6.8458 -0.9748 19 6 1.9316 -3.7276 0.0005 20 1 -0.4850 0.8401 0.0004 21 1 -0.5989 -1.7586 -0.6161 22 1 -0.5299 -2.4866 1.0169 23 1 -0.3509 -3.8973 -1.7016 24 1 -1.3590 -4.3329 -0.2812 25 1 3.2049 -6.1662 -0.6437 26 1 2.1891 -6.7590 0.7104 27 1 2.6274 -8.8026 -0.4892 28 1 2.5408 -7.9825 -2.0828 29 1 0.2980 -8.8783 -0.2693 30 1 0.3116 -8.7067 -2.0507 31 1 -0.6098 -6.7863 -0.0656 32 1 -0.6332 -6.6280 -1.8432 33 1 2.5274 -3.8649 0.9029 34 1 2.5586 -3.8506 -0.8825 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061858176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:07 Heat of formation + Delta-G solvation = 10.785224 kcal Electronic energy + Delta-G solvation = -14342.093784 eV Core-core repulsion = 12081.560019 eV Total energy + Delta-G solvation = -2260.533765 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.35195 -38.11856 -34.63624 -32.31036 -30.82140 -29.68228 -28.19549 -26.17381 -22.76910 -22.42466 -21.17288 -20.88574 -18.91311 -17.52324 -16.77811 -16.58914 -15.96185 -15.28405 -14.81383 -14.35913 -14.25522 -13.60189 -13.56035 -13.31293 -13.06733 -12.79650 -12.69620 -12.17851 -12.05637 -11.94776 -11.86804 -11.81530 -11.62308 -11.36749 -11.35741 -10.77050 -9.35043 -8.91511 -7.78997 -5.24122 1.46041 1.47867 1.58397 2.48103 2.99694 3.31691 3.64982 3.73013 3.81445 4.03618 4.08608 4.22969 4.28735 4.39958 4.64329 4.67030 4.73907 4.81066 4.93921 4.98142 5.02932 5.04227 5.08513 5.11789 5.25823 5.37459 5.44445 5.61054 5.77166 6.04364 6.16067 6.29363 7.08878 7.75577 8.40377 9.23704 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.070669 B = 0.007193 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.118235 B = 3891.669266 C = 4188.694752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.985 3.015 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.627 5.627 10 C 0.155 3.845 11 C -0.116 4.116 12 C 0.080 3.920 13 H 0.047 0.953 14 N -0.521 5.521 15 C 0.028 3.972 16 C -0.115 4.115 17 C -0.124 4.124 18 C 0.033 3.967 19 C 0.147 3.853 20 H 0.248 0.752 21 H 0.075 0.925 22 H -0.012 1.012 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.017 0.983 34 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -15.732 -1.329 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.812 3.188 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.353 5.353 10 C 0.029 3.971 11 C -0.155 4.155 12 C -0.029 4.029 13 H 0.064 0.936 14 N -0.246 5.246 15 C -0.100 4.100 16 C -0.153 4.153 17 C -0.162 4.162 18 C -0.095 4.095 19 C 0.021 3.979 20 H 0.058 0.942 21 H 0.093 0.907 22 H 0.006 0.994 23 H 0.082 0.918 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.034 0.966 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.314 -15.310 -1.834 15.475 hybrid contribution 0.070 0.967 1.033 1.417 sum 1.384 -14.342 -0.801 14.431 Atomic orbital electron populations 1.70061 1.06313 1.25088 1.58608 1.25693 0.96717 1.01119 1.02540 0.84918 0.78012 0.78955 0.76876 1.19106 1.21573 1.21687 1.19512 0.91030 0.83740 1.42687 0.90221 1.44784 1.02829 1.00890 1.86834 1.21709 0.84143 0.94759 0.96443 1.22842 0.96982 0.95445 1.00202 1.22598 0.95432 0.91095 0.93821 0.93553 1.64780 1.05762 1.07397 1.46687 1.23308 0.94550 0.94669 0.97458 1.22466 0.96347 0.95232 1.01288 1.22397 0.95241 0.95209 1.03329 1.22904 0.93545 0.91946 1.01107 1.21294 0.94566 0.84665 0.97362 0.94211 0.90740 0.99425 0.91786 0.90229 0.90864 0.93891 0.89179 0.90781 0.90291 0.89800 0.93997 0.90587 0.96553 0.95340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.43 10.09 21.65 0.22 -58.21 16 2 C -0.07 -4.02 5.49 84.87 0.47 -3.55 16 3 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 7 C -0.24 -14.18 10.27 84.04 0.86 -13.32 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 9 N -0.63 -34.57 3.39 -691.97 -2.35 -36.92 16 10 C 0.15 8.11 5.89 86.86 0.51 8.62 16 11 C -0.12 -4.69 6.08 31.99 0.19 -4.50 16 12 C 0.08 2.99 2.29 46.10 0.11 3.10 16 13 H 0.05 1.70 8.07 -2.39 -0.02 1.68 16 14 N -0.52 -16.25 5.07 -850.91 -4.31 -20.56 16 15 C 0.03 0.72 5.96 86.65 0.52 1.24 16 16 C -0.12 -2.20 7.06 31.80 0.22 -1.98 16 17 C -0.12 -2.26 6.93 31.48 0.22 -2.04 16 18 C 0.03 0.81 6.07 86.45 0.52 1.33 16 19 C 0.15 6.63 6.28 86.73 0.54 7.17 16 20 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 21 H 0.07 4.40 5.87 -2.39 -0.01 4.38 16 22 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 23 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 25 H 0.07 2.00 8.10 -2.39 -0.02 1.99 16 26 H 0.04 1.10 8.00 -2.39 -0.02 1.08 16 27 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 31 H 0.04 1.04 7.74 -2.39 -0.02 1.02 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.03 1.31 8.03 -2.39 -0.02 1.30 16 Total: -1.00 -66.36 266.97 0.80 -65.57 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.04 Total: 5.17 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 4.17 Total: -3.93 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -6.44 Total: -115.69 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -66.36 0.80 -65.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061858176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.353 kcal (2) G-P(sol) polarization free energy of solvation -66.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds