Wall clock time and date at job start Sun Mar 29 2020 21:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86801 * 119.99443 * 2 1 4 4 H 1.48499 * 109.47237 * 274.98131 * 3 2 1 5 5 H 1.48500 * 109.47609 * 34.98578 * 3 2 1 6 6 H 1.48512 * 109.46777 * 154.98617 * 3 2 1 7 7 C 1.40045 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00173 * 186.14956 * 7 2 1 9 9 C 1.46382 * 119.99474 * 6.14718 * 7 2 1 10 10 O 1.21678 * 120.00380 * 353.94401 * 9 7 2 11 11 N 1.34777 * 119.99579 * 173.93862 * 9 7 2 12 12 C 1.46504 * 120.00059 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47260 * 180.02562 * 12 11 9 14 14 C 1.38417 * 122.53839 * 89.99670 * 13 12 11 15 15 C 1.33386 * 114.91989 * 179.97438 * 14 13 12 16 16 S 1.75887 * 109.59491 * 0.02562 * 15 14 13 17 17 C 1.33386 * 122.53720 * 269.97685 * 13 12 11 18 18 H 0.97001 * 119.99998 * 359.97438 * 1 2 3 19 19 H 0.96998 * 120.00132 * 0.02562 * 11 9 7 20 20 H 1.08997 * 109.47025 * 59.99749 * 12 11 9 21 21 H 1.08995 * 109.46477 * 300.00234 * 12 11 9 22 22 H 1.07998 * 122.54194 * 359.70887 * 14 13 12 23 23 H 1.08003 * 125.20434 * 179.97438 * 15 14 13 24 24 H 1.08003 * 125.20536 * 0.05875 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3828 2.1073 -1.3948 5 1 1.4947 2.6201 0.8027 6 1 3.5870 1.4122 0.5921 7 6 2.0071 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0996 9 6 1.2815 -2.4768 -0.1369 10 8 0.0647 -2.4827 -0.1389 11 7 1.9612 -3.6340 -0.2603 12 6 1.2351 -4.8990 -0.3973 13 6 2.2201 -6.0332 -0.5172 14 6 2.7047 -6.7180 0.5839 15 6 3.5688 -7.6945 0.3029 16 16 3.8105 -7.7856 -1.4369 17 6 2.6908 -6.4535 -1.6923 18 1 -0.4850 0.8401 0.0004 19 1 2.9312 -3.6293 -0.2584 20 1 0.6100 -4.8643 -1.2895 21 1 0.6075 -5.0545 0.4802 22 1 2.4091 -6.4769 1.5942 23 1 4.0475 -8.3313 1.0321 24 1 2.4256 -6.0387 -2.6536 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063146523.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:40 Heat of formation + Delta-G solvation = -10.203088 kcal Electronic energy + Delta-G solvation = -11220.290171 eV Core-core repulsion = 9032.214305 eV Total energy + Delta-G solvation = -2188.075866 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.40369 -36.77527 -33.05613 -32.18311 -29.59756 -27.04645 -25.22877 -22.55940 -19.68559 -18.69844 -17.67792 -16.90583 -15.36792 -15.10169 -14.21961 -13.94807 -13.48495 -12.86267 -12.67703 -12.33487 -12.24893 -11.62084 -11.28570 -11.13322 -10.87124 -10.62680 -10.41280 -10.20575 -8.83745 -8.72422 -8.36818 -7.56791 -7.49100 -6.18109 -4.62253 1.11502 1.76438 2.07034 2.82289 3.15071 3.22271 3.26046 4.13331 4.59974 5.01276 5.15692 5.27898 5.60609 5.63144 5.79216 6.05901 6.21934 6.36169 6.60243 6.79555 7.45221 7.94889 8.09991 8.35219 9.03869 9.55173 10.60842 10.79217 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.064580 B = 0.006365 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.464022 B = 4397.812806 C = 4581.916121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.582 6.582 11 N -0.763 5.763 12 C 0.189 3.811 13 C -0.107 4.107 14 C -0.117 4.117 15 C -0.218 4.218 16 S 0.071 5.929 17 C -0.194 4.194 18 H 0.268 0.732 19 H 0.381 0.619 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.142 0.858 23 H 0.162 0.838 24 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.758 -11.752 -1.261 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.465 6.465 11 N -0.418 5.418 12 C 0.062 3.938 13 C -0.119 4.119 14 C -0.148 4.148 15 C -0.353 4.353 16 S 0.334 5.666 17 C -0.330 4.330 18 H 0.079 0.921 19 H 0.213 0.787 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.159 0.841 23 H 0.179 0.821 24 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.542 -12.584 -2.205 14.835 hybrid contribution 0.129 1.608 0.907 1.851 sum 7.671 -10.975 -1.298 13.453 Atomic orbital electron populations 1.70032 1.07079 1.27249 1.35349 1.25713 0.94605 1.00305 0.92619 0.86356 0.80230 0.81473 0.78665 1.19813 1.20448 1.18894 1.20881 0.94110 0.89520 1.53715 0.91383 1.18251 0.87141 0.82327 0.76409 1.90596 1.14106 1.86361 1.55402 1.46196 1.08680 1.05120 1.81851 1.19518 0.91499 0.81599 1.01182 1.19299 1.01001 0.99648 0.92000 1.20190 0.98241 0.96030 1.00322 1.25516 1.06324 1.05361 0.98075 1.84093 1.45440 1.34358 1.02722 1.25548 1.03440 1.01698 1.02347 0.92123 0.78736 0.92498 0.92381 0.84076 0.82084 0.81768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.24 11.85 55.55 0.66 -22.58 14 2 C 0.09 2.46 5.49 -17.37 -0.10 2.36 14 3 Si 0.91 20.27 29.56 -169.99 -5.03 15.25 14 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 14 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 14 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 14 7 C -0.55 -15.58 9.54 -35.63 -0.34 -15.92 14 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 14 9 C 0.55 16.01 7.74 -12.98 -0.10 15.91 14 10 O -0.58 -19.07 15.04 5.21 0.08 -18.99 14 11 N -0.76 -17.45 5.54 -62.90 -0.35 -17.80 14 12 C 0.19 3.73 5.92 -5.19 -0.03 3.70 14 13 C -0.11 -1.69 5.17 -106.25 -0.55 -2.24 14 14 C -0.12 -1.64 9.98 -41.21 -0.41 -2.05 14 15 C -0.22 -2.59 11.23 29.04 0.33 -2.27 14 16 S 0.07 0.84 23.34 -107.50 -2.51 -1.67 14 17 C -0.19 -2.74 10.98 29.04 0.32 -2.42 14 18 H 0.27 7.33 8.29 -40.82 -0.34 6.99 14 19 H 0.38 7.87 8.44 -40.82 -0.34 7.53 14 20 H 0.06 1.17 8.12 -51.93 -0.42 0.75 14 21 H 0.06 1.19 8.13 -51.93 -0.42 0.77 14 22 H 0.14 1.86 8.06 -52.49 -0.42 1.44 14 23 H 0.16 1.48 8.06 -52.48 -0.42 1.06 14 24 H 0.16 2.16 8.06 -52.48 -0.42 1.74 14 LS Contribution 237.72 15.07 3.58 3.58 Total: -1.00 -33.59 237.72 -6.45 -40.04 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -2.00 Total: 5.09 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.88 Total: -2.92 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.31 Total: -40.38 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.08 Total: -18.99 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.25 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -33.59 -6.45 -40.04 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063146523.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.839 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds