Wall clock time and date at job start Sun Mar 29 2020 21:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86801 * 119.99443 * 2 1 4 4 H 1.48499 * 109.47237 * 274.98131 * 3 2 1 5 5 H 1.48500 * 109.47609 * 34.98578 * 3 2 1 6 6 H 1.48512 * 109.46777 * 154.98617 * 3 2 1 7 7 C 1.40045 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00173 * 186.14956 * 7 2 1 9 9 C 1.46382 * 119.99474 * 6.14718 * 7 2 1 10 10 O 1.21678 * 120.00380 * 353.94401 * 9 7 2 11 11 N 1.34777 * 119.99579 * 173.93862 * 9 7 2 12 12 C 1.46504 * 120.00059 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47260 * 180.02562 * 12 11 9 14 14 C 1.38417 * 122.53839 * 89.99670 * 13 12 11 15 15 C 1.33386 * 114.91989 * 179.97438 * 14 13 12 16 16 S 1.75887 * 109.59491 * 0.02562 * 15 14 13 17 17 C 1.33386 * 122.53720 * 269.97685 * 13 12 11 18 18 H 0.97001 * 119.99998 * 359.97438 * 1 2 3 19 19 H 0.96998 * 120.00132 * 0.02562 * 11 9 7 20 20 H 1.08997 * 109.47025 * 59.99749 * 12 11 9 21 21 H 1.08995 * 109.46477 * 300.00234 * 12 11 9 22 22 H 1.07998 * 122.54194 * 359.70887 * 14 13 12 23 23 H 1.08003 * 125.20434 * 179.97438 * 15 14 13 24 24 H 1.08003 * 125.20536 * 0.05875 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3828 2.1073 -1.3948 5 1 1.4947 2.6201 0.8027 6 1 3.5870 1.4122 0.5921 7 6 2.0071 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0996 9 6 1.2815 -2.4768 -0.1369 10 8 0.0647 -2.4827 -0.1389 11 7 1.9612 -3.6340 -0.2603 12 6 1.2351 -4.8990 -0.3973 13 6 2.2201 -6.0332 -0.5172 14 6 2.7047 -6.7180 0.5839 15 6 3.5688 -7.6945 0.3029 16 16 3.8105 -7.7856 -1.4369 17 6 2.6908 -6.4535 -1.6923 18 1 -0.4850 0.8401 0.0004 19 1 2.9312 -3.6293 -0.2584 20 1 0.6100 -4.8643 -1.2895 21 1 0.6075 -5.0545 0.4802 22 1 2.4091 -6.4769 1.5942 23 1 4.0475 -8.3313 1.0321 24 1 2.4256 -6.0387 -2.6536 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063146523.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:40 Heat of formation + Delta-G solvation = -34.554906 kcal Electronic energy + Delta-G solvation = -11221.346145 eV Core-core repulsion = 9032.214305 eV Total energy + Delta-G solvation = -2189.131840 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.89964 -38.61505 -35.00556 -34.30163 -30.92450 -28.89612 -26.96710 -23.79014 -21.76310 -20.02132 -19.19583 -18.34713 -17.44539 -16.54846 -16.04158 -15.64723 -15.17392 -14.36316 -13.94502 -13.87925 -13.72162 -13.09461 -12.95330 -12.87615 -12.65870 -12.59058 -12.00216 -11.68829 -10.93634 -10.02695 -9.70796 -9.51146 -9.29089 -8.30096 -6.86161 0.05158 0.74725 1.03241 1.40677 1.42095 1.57971 1.66710 2.26430 2.46114 3.32676 3.59339 3.96177 4.07961 4.41542 4.57711 4.68768 4.79470 5.09967 5.31954 5.40700 5.57914 5.86507 6.18740 6.25762 6.85964 7.52533 8.46973 8.65986 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.064580 B = 0.006365 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.464022 B = 4397.812806 C = 4581.916121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.248 1.248 7 C -0.573 4.573 8 H 0.087 0.913 9 C 0.537 3.463 10 O -0.633 6.633 11 N -0.749 5.749 12 C 0.194 3.806 13 C -0.123 4.123 14 C -0.141 4.141 15 C -0.205 4.205 16 S 0.133 5.867 17 C -0.207 4.207 18 H 0.275 0.725 19 H 0.394 0.606 20 H 0.041 0.959 21 H 0.042 0.958 22 H 0.142 0.858 23 H 0.194 0.806 24 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.325 -12.193 -1.388 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.172 1.172 7 C -0.610 4.610 8 H 0.105 0.895 9 C 0.342 3.658 10 O -0.521 6.521 11 N -0.403 5.403 12 C 0.067 3.933 13 C -0.136 4.136 14 C -0.171 4.171 15 C -0.340 4.340 16 S 0.397 5.603 17 C -0.343 4.343 18 H 0.085 0.915 19 H 0.227 0.773 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.160 0.840 23 H 0.211 0.789 24 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.159 -13.082 -2.335 16.727 hybrid contribution -0.634 1.588 0.910 1.937 sum 9.525 -11.493 -1.425 14.995 Atomic orbital electron populations 1.70195 1.09590 1.29038 1.36321 1.27017 0.95546 1.05053 0.91161 0.84967 0.78873 0.74967 0.79208 1.18742 1.19629 1.17152 1.21417 0.95200 0.90197 1.54151 0.89472 1.18657 0.86780 0.84198 0.76200 1.90546 1.16222 1.87529 1.57808 1.45868 1.09213 1.05056 1.80199 1.19435 0.92312 0.81847 0.99669 1.18972 1.01635 0.99370 0.93666 1.20166 0.99766 0.97274 0.99894 1.25923 1.04681 1.04238 0.99181 1.83936 1.42890 1.31589 1.01926 1.25737 1.03865 1.02731 1.01985 0.91483 0.77284 0.94064 0.93925 0.84035 0.78896 0.81453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.99 11.85 21.84 0.26 -50.73 14 2 C 0.03 1.54 5.49 85.30 0.47 2.01 14 3 Si 1.00 41.27 29.56 68.60 2.03 43.30 14 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 14 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 14 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 14 7 C -0.57 -33.09 9.54 24.83 0.24 -32.85 14 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 14 9 C 0.54 32.04 7.74 86.36 0.67 32.71 14 10 O -0.63 -43.53 15.04 -4.28 -0.06 -43.59 14 11 N -0.75 -35.15 5.54 -471.15 -2.61 -37.76 14 12 C 0.19 7.97 5.92 85.63 0.51 8.48 14 13 C -0.12 -3.86 5.17 -20.92 -0.11 -3.97 14 14 C -0.14 -3.76 9.98 21.21 0.21 -3.54 14 15 C -0.21 -4.24 11.23 66.72 0.75 -3.49 14 16 S 0.13 2.71 23.34 -56.49 -1.32 1.39 14 17 C -0.21 -5.57 10.98 66.72 0.73 -4.83 14 18 H 0.28 15.38 8.29 -92.71 -0.77 14.61 14 19 H 0.39 16.33 8.44 -92.71 -0.78 15.54 14 20 H 0.04 1.79 8.12 -2.39 -0.02 1.78 14 21 H 0.04 1.86 8.13 -2.39 -0.02 1.84 14 22 H 0.14 3.66 8.06 -2.91 -0.02 3.64 14 23 H 0.19 2.70 8.06 -2.91 -0.02 2.68 14 24 H 0.17 4.28 8.06 -2.91 -0.02 4.26 14 Total: -1.00 -74.71 237.72 2.20 -72.51 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.44 Total: 20.37 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 3.47 Total: -5.49 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -2.35 Total: -88.50 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -0.06 Total: -43.59 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.32 Total: 1.39 kcal Total: -74.71 2.20 -72.51 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063146523.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.960 kcal (2) G-P(sol) polarization free energy of solvation -74.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds