Wall clock time and date at job start Sun Mar 29 2020 21:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99761 * 2 1 4 4 H 1.48503 * 109.47315 * 270.00067 * 3 2 1 5 5 H 1.48493 * 109.47113 * 30.00565 * 3 2 1 6 6 H 1.48506 * 109.46776 * 150.00237 * 3 2 1 7 7 C 1.37874 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47128 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00082 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46801 * 180.02562 * 12 11 10 14 14 C 1.38425 * 122.53762 * 89.99949 * 13 12 11 15 15 C 1.33390 * 114.92123 * 179.97438 * 14 13 12 16 16 S 1.75891 * 109.59251 * 0.02562 * 15 14 13 17 17 C 1.33383 * 122.54063 * 269.97222 * 13 12 11 18 18 H 0.97000 * 120.00550 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.46687 * 60.00432 * 9 7 2 20 20 H 1.09000 * 109.46661 * 300.00569 * 9 7 2 21 21 H 1.08999 * 109.47138 * 60.00520 * 10 9 7 22 22 H 1.08995 * 109.47660 * 300.00255 * 10 9 7 23 23 H 1.00896 * 110.99690 * 56.04714 * 11 10 9 24 24 H 1.08999 * 109.47322 * 60.00133 * 12 11 10 25 25 H 1.09003 * 109.47232 * 299.99766 * 12 11 10 26 26 H 1.07997 * 122.54292 * 359.71157 * 14 13 12 27 27 H 1.08003 * 125.20243 * 179.97438 * 15 14 13 28 28 H 1.08000 * 125.20529 * 0.06732 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9343 0.0001 12 6 2.4354 -6.0759 0.0007 13 6 1.6473 -7.3604 0.0007 14 6 1.2584 -7.9953 -1.1663 15 6 0.5674 -9.1225 -0.9895 16 16 0.3757 -9.4331 0.7311 17 6 1.2721 -7.9720 1.1251 18 1 -0.4851 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8896 21 1 2.8719 -3.6043 0.8895 22 1 2.8720 -3.6043 -0.8904 23 1 0.8742 -4.9846 -0.7810 24 1 3.0633 -6.0344 0.8907 25 1 3.0634 -6.0353 -0.8893 26 1 1.4928 -7.6053 -2.1457 27 1 0.1835 -9.7482 -1.7817 28 1 1.4851 -7.6228 2.1247 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063152853.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:11 Heat of formation + Delta-G solvation = 21.603367 kcal Electronic energy + Delta-G solvation = -11141.738455 eV Core-core repulsion = 9090.874915 eV Total energy + Delta-G solvation = -2050.863540 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.39028 -35.39871 -32.87747 -30.42817 -28.78651 -25.84678 -23.63970 -22.34561 -20.55925 -18.65552 -17.47240 -16.30022 -15.75086 -14.58491 -14.44594 -14.08645 -13.34400 -12.92247 -12.74060 -12.64699 -12.10671 -11.88040 -11.55379 -11.00177 -10.94936 -10.75541 -10.51356 -9.98485 -9.41212 -9.16010 -8.75094 -8.38959 -8.33925 -7.79311 -5.98784 -4.01553 1.06001 1.70029 2.01062 2.74908 3.32558 3.38718 3.42135 4.45292 4.85998 5.05744 5.17646 5.37032 5.40945 5.50722 5.70661 5.86293 6.08128 6.33357 6.37753 6.46889 6.58496 6.98164 7.47574 7.73784 7.83057 7.96218 8.09538 8.44205 9.05792 9.62159 11.12641 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.085504 B = 0.004748 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.391526 B = 5896.380124 C = 5961.927083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.687 5.687 12 C 0.115 3.885 13 C -0.098 4.098 14 C -0.126 4.126 15 C -0.216 4.216 16 S 0.075 5.925 17 C -0.187 4.187 18 H 0.261 0.739 19 H 0.014 0.986 20 H 0.025 0.975 21 H 0.059 0.941 22 H 0.016 0.984 23 H 0.337 0.663 24 H 0.076 0.924 25 H 0.033 0.967 26 H 0.138 0.862 27 H 0.161 0.839 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 -17.299 -0.785 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.317 5.317 12 C -0.016 4.016 13 C -0.110 4.110 14 C -0.157 4.157 15 C -0.351 4.351 16 S 0.337 5.663 17 C -0.323 4.323 18 H 0.070 0.930 19 H 0.032 0.968 20 H 0.044 0.956 21 H 0.077 0.923 22 H 0.034 0.966 23 H 0.155 0.845 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.155 0.845 27 H 0.179 0.821 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.424 -18.332 0.756 18.403 hybrid contribution 1.361 2.070 -1.781 3.051 sum 2.786 -16.262 -1.025 16.530 Atomic orbital electron populations 1.69973 1.06038 1.26596 1.50624 1.25008 0.94847 0.99230 0.95314 0.86582 0.79835 0.83448 0.78051 1.20708 1.21186 1.19877 1.21180 0.92991 0.91008 1.50899 0.92734 1.19070 0.94029 0.90383 0.97765 1.22188 0.97033 0.88353 0.98712 1.60637 1.19529 1.01615 1.49965 1.20589 0.93199 0.87008 1.00828 1.18988 1.01953 0.98168 0.91916 1.20148 1.00442 0.95598 0.99488 1.25501 1.07880 1.02962 0.98803 1.84152 1.55649 1.25339 1.01120 1.25470 1.05279 0.98859 1.02699 0.92982 0.96797 0.95621 0.92268 0.96578 0.84517 0.90576 0.94865 0.84453 0.82121 0.81773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.46 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 15 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 15 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.02 0.66 5.23 -27.88 -0.15 0.51 15 10 C 0.07 1.39 5.62 -3.83 -0.02 1.37 15 11 N -0.69 -12.60 6.49 -115.06 -0.75 -13.34 15 12 C 0.12 1.72 5.94 -4.97 -0.03 1.70 15 13 C -0.10 -1.34 5.31 -106.25 -0.56 -1.90 15 14 C -0.13 -1.54 9.98 -41.21 -0.41 -1.95 15 15 C -0.22 -2.37 11.23 29.04 0.33 -2.04 15 16 S 0.07 0.83 23.34 -107.50 -2.51 -1.68 15 17 C -0.19 -2.40 10.98 29.04 0.32 -2.08 15 18 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 19 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 15 20 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.06 1.26 8.14 -51.93 -0.42 0.83 15 22 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 15 23 H 0.34 6.08 8.72 -39.29 -0.34 5.74 15 24 H 0.08 1.11 8.12 -51.93 -0.42 0.68 15 25 H 0.03 0.47 8.13 -51.93 -0.42 0.05 15 26 H 0.14 1.50 8.06 -52.49 -0.42 1.08 15 27 H 0.16 1.35 8.06 -52.48 -0.42 0.93 15 28 H 0.16 1.95 8.06 -52.49 -0.42 1.52 15 LS Contribution 260.60 15.07 3.93 3.93 Total: -1.00 -30.39 260.60 -8.24 -38.63 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.69 Total: 0.26 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -0.94 Total: -18.12 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: -0.01 Total: -39.80 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.39 -8.24 -38.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063152853.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.229 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds