Wall clock time and date at job start Sun Mar 29 2020 21:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99761 * 2 1 4 4 H 1.48503 * 109.47315 * 270.00067 * 3 2 1 5 5 H 1.48493 * 109.47113 * 30.00565 * 3 2 1 6 6 H 1.48506 * 109.46776 * 150.00237 * 3 2 1 7 7 C 1.37874 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00158 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47128 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00082 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46801 * 180.02562 * 12 11 10 14 14 C 1.38425 * 122.53762 * 89.99949 * 13 12 11 15 15 C 1.33390 * 114.92123 * 179.97438 * 14 13 12 16 16 S 1.75891 * 109.59251 * 0.02562 * 15 14 13 17 17 C 1.33383 * 122.54063 * 269.97222 * 13 12 11 18 18 H 0.97000 * 120.00550 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.46687 * 60.00432 * 9 7 2 20 20 H 1.09000 * 109.46661 * 300.00569 * 9 7 2 21 21 H 1.08999 * 109.47138 * 60.00520 * 10 9 7 22 22 H 1.08995 * 109.47660 * 300.00255 * 10 9 7 23 23 H 1.00896 * 110.99690 * 56.04714 * 11 10 9 24 24 H 1.08999 * 109.47322 * 60.00133 * 12 11 10 25 25 H 1.09003 * 109.47232 * 299.99766 * 12 11 10 26 26 H 1.07997 * 122.54292 * 359.71157 * 14 13 12 27 27 H 1.08003 * 125.20243 * 179.97438 * 15 14 13 28 28 H 1.08000 * 125.20529 * 0.06732 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9343 0.0001 12 6 2.4354 -6.0759 0.0007 13 6 1.6473 -7.3604 0.0007 14 6 1.2584 -7.9953 -1.1663 15 6 0.5674 -9.1225 -0.9895 16 16 0.3757 -9.4331 0.7311 17 6 1.2721 -7.9720 1.1251 18 1 -0.4851 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8896 21 1 2.8719 -3.6043 0.8895 22 1 2.8720 -3.6043 -0.8904 23 1 0.8742 -4.9846 -0.7810 24 1 3.0633 -6.0344 0.8907 25 1 3.0634 -6.0353 -0.8893 26 1 1.4928 -7.6053 -2.1457 27 1 0.1835 -9.7482 -1.7817 28 1 1.4851 -7.6228 2.1247 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063152853.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:11 Heat of formation + Delta-G solvation = 2.012825 kcal Electronic energy + Delta-G solvation = -11142.587965 eV Core-core repulsion = 9090.874915 eV Total energy + Delta-G solvation = -2051.713050 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.43094 -36.96175 -34.91234 -31.97298 -30.17567 -27.37675 -25.33258 -23.44715 -22.44856 -19.63917 -18.55434 -18.35112 -17.06668 -16.45126 -15.82902 -15.57563 -14.67077 -14.32307 -14.18673 -13.82571 -13.54695 -13.24014 -13.04877 -12.80351 -12.53228 -12.41507 -11.96217 -11.68525 -11.39757 -11.25961 -10.56661 -9.68901 -9.41002 -9.17421 -8.20236 -6.32108 0.12960 0.80401 1.09497 1.40652 1.42460 1.53640 1.76214 2.41022 3.13090 3.53818 4.06940 4.09756 4.34419 4.50512 4.59899 4.64205 4.71262 4.78764 5.06502 5.15812 5.43935 5.49743 5.59144 5.66779 5.77981 6.12613 6.26103 6.50749 6.85352 7.37296 8.91980 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.085504 B = 0.004748 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.391526 B = 5896.380124 C = 5961.927083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.031 3.969 10 C 0.083 3.917 11 N -0.694 5.694 12 C 0.119 3.881 13 C -0.113 4.113 14 C -0.144 4.144 15 C -0.211 4.211 16 S 0.103 5.897 17 C -0.204 4.204 18 H 0.264 0.736 19 H -0.009 1.009 20 H -0.007 1.007 21 H 0.060 0.940 22 H 0.022 0.978 23 H 0.338 0.662 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.147 0.853 27 H 0.188 0.812 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 -17.877 -1.105 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.006 4.006 10 C -0.045 4.045 11 N -0.325 5.325 12 C -0.012 4.012 13 C -0.126 4.126 14 C -0.174 4.174 15 C -0.346 4.346 16 S 0.366 5.634 17 C -0.341 4.341 18 H 0.073 0.927 19 H 0.009 0.991 20 H 0.011 0.989 21 H 0.079 0.921 22 H 0.041 0.959 23 H 0.155 0.845 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.165 0.835 27 H 0.205 0.795 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.301 -18.938 0.436 19.082 hybrid contribution 1.032 2.146 -1.666 2.907 sum 3.333 -16.791 -1.231 17.163 Atomic orbital electron populations 1.70112 1.07878 1.27829 1.51422 1.26004 0.95784 1.03472 0.94615 0.85398 0.78625 0.78186 0.78527 1.19673 1.20747 1.18648 1.21625 0.93609 0.92190 1.50922 0.91975 1.18926 0.94342 0.92367 0.95014 1.21806 0.95610 0.88091 0.99032 1.60544 1.20182 1.01508 1.50233 1.20580 0.92891 0.86334 1.01388 1.18973 1.02811 0.97902 0.92890 1.20270 1.01365 0.96291 0.99523 1.25883 1.06650 1.02600 0.99506 1.84063 1.54451 1.23748 1.01099 1.25679 1.05608 0.99940 1.02845 0.92732 0.99090 0.98855 0.92121 0.95934 0.84452 0.90312 0.93879 0.83500 0.79469 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.34 15 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 15 3 Si 0.97 44.53 29.54 68.60 2.03 46.56 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 6 H -0.26 -11.48 7.11 99.48 0.71 -10.78 15 7 C -0.55 -31.48 9.11 25.60 0.23 -31.25 15 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 15 9 C 0.03 1.69 5.23 29.85 0.16 1.84 15 10 C 0.08 3.55 5.62 86.30 0.49 4.04 15 11 N -0.69 -25.37 6.49 -517.94 -3.36 -28.74 15 12 C 0.12 3.45 5.94 85.56 0.51 3.96 15 13 C -0.11 -2.97 5.31 -20.92 -0.11 -3.08 15 14 C -0.14 -3.30 9.98 21.22 0.21 -3.09 15 15 C -0.21 -4.13 11.23 66.72 0.75 -3.38 15 16 S 0.10 2.08 23.34 -56.49 -1.32 0.77 15 17 C -0.20 -5.02 10.98 66.72 0.73 -4.29 15 18 H 0.26 15.26 8.31 -92.71 -0.77 14.49 15 19 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 15 20 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 15 21 H 0.06 2.55 8.14 -2.39 -0.02 2.54 15 22 H 0.02 0.93 8.14 -2.39 -0.02 0.91 15 23 H 0.34 12.24 8.72 -89.70 -0.78 11.46 15 24 H 0.08 2.22 8.12 -2.39 -0.02 2.20 15 25 H 0.04 1.17 8.13 -2.39 -0.02 1.15 15 26 H 0.15 2.98 8.06 -2.91 -0.02 2.96 15 27 H 0.19 2.55 8.06 -2.91 -0.02 2.53 15 28 H 0.17 3.86 8.06 -2.91 -0.02 3.83 15 Total: -1.00 -64.59 260.60 1.42 -63.18 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.36 Total: 10.41 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 3.43 Total: -34.83 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -3.08 Total: -86.08 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.32 Total: 0.77 kcal Total: -64.59 1.42 -63.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063152853.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.188 kcal (2) G-P(sol) polarization free energy of solvation -64.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds