Wall clock time and date at job start Sun Mar 29 2020 21:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47113 * 2 1 4 4 N 1.46902 * 109.47028 * 119.99652 * 2 1 3 5 5 C 1.46899 * 110.99652 * 154.99541 * 4 2 1 6 6 C 1.50706 * 109.46948 * 179.97438 * 5 4 2 7 7 C 1.34945 * 125.48604 * 95.00405 * 6 5 4 8 8 N 1.36669 * 106.72864 * 179.73826 * 7 6 5 9 9 C 1.37569 * 126.88645 * 180.22833 * 8 7 6 10 10 H 1.08000 * 119.99994 * 354.18367 * 9 8 7 11 11 C 1.39003 * 119.99736 * 174.19071 * 9 8 7 12 12 N 1.31252 * 120.00480 * 5.87967 * 11 9 8 13 13 Si 1.86810 * 119.99690 * 185.88796 * 11 9 8 14 14 H 1.48500 * 109.47210 * 94.97552 * 13 11 9 15 15 H 1.48498 * 109.46749 * 214.97691 * 13 11 9 16 16 H 1.48495 * 109.46895 * 334.97523 * 13 11 9 17 17 N 1.40322 * 106.22336 * 0.26041 * 8 7 6 18 18 N 1.28756 * 108.03392 * 0.02562 * 17 8 7 19 19 H 1.09004 * 109.46729 * 300.00429 * 1 2 3 20 20 H 1.08999 * 109.47130 * 60.00034 * 1 2 3 21 21 H 1.08997 * 109.47503 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46729 * 239.99571 * 2 1 3 23 23 H 1.09002 * 109.46604 * 299.99896 * 3 2 1 24 24 H 1.08997 * 109.47368 * 59.99899 * 3 2 1 25 25 H 1.09004 * 109.46775 * 180.02562 * 3 2 1 26 26 H 1.00894 * 111.00398 * 278.95522 * 4 2 1 27 27 H 1.08998 * 109.47063 * 60.00559 * 5 4 2 28 28 H 1.08996 * 109.47469 * 300.00245 * 5 4 2 29 29 H 1.08005 * 126.63630 * 0.02562 * 7 6 5 30 30 H 0.96996 * 119.99917 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.3670 -1.2355 0.9807 6 6 3.8351 -1.9364 2.2300 7 6 3.7249 -3.2590 2.4742 8 7 4.2735 -3.4785 3.7065 9 6 4.3824 -4.6848 4.3590 10 1 3.9286 -5.5695 3.9375 11 6 5.0762 -4.7647 5.5608 12 7 5.5281 -3.6727 6.1317 13 14 5.3657 -6.4266 6.3633 14 1 6.7005 -6.9423 5.9662 15 1 5.3111 -6.2794 7.8399 16 1 4.3156 -7.3792 5.9216 17 7 4.7029 -2.2268 4.1732 18 7 4.4215 -1.3485 3.2747 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.6766 1.9562 -0.8900 24 1 1.6767 1.9563 0.8899 25 1 3.1300 1.4424 -0.0005 26 1 2.0020 -0.0815 2.0023 27 1 4.0523 -0.4220 0.7425 28 1 3.3430 -1.9444 0.1531 29 1 3.2915 -4.0013 1.8202 30 1 6.0120 -3.7285 6.9705 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082018456.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:34 Heat of formation + Delta-G solvation = 56.906137 kcal Electronic energy + Delta-G solvation = -13459.258388 eV Core-core repulsion = 11097.184233 eV Total energy + Delta-G solvation = -2362.074155 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.01334 -38.18645 -36.02102 -33.49376 -32.98280 -30.03584 -27.93580 -27.71061 -25.33862 -23.28271 -21.71238 -21.39507 -19.35785 -17.46044 -16.65378 -16.34682 -15.85855 -15.53161 -15.26829 -14.62109 -14.43084 -13.83823 -13.71059 -13.26117 -13.14816 -12.97996 -12.89442 -12.52290 -12.10511 -12.04413 -11.77156 -11.69135 -11.45204 -11.16745 -10.64241 -9.42866 -9.15976 -8.68999 -6.61876 1.11908 1.38272 1.58751 1.65058 2.07373 2.13310 2.79488 2.92264 3.51099 4.03746 4.16686 4.27473 4.35961 4.50407 4.58342 4.73546 4.81868 4.89045 4.96642 5.03047 5.11068 5.12944 5.30062 5.31359 5.48753 5.95776 5.98016 6.26668 6.48051 6.61844 7.20343 8.22099 8.32817 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.075947 B = 0.006199 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.588491 B = 4515.477119 C = 4696.280472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.074 3.926 3 C -0.178 4.178 4 N -0.689 5.689 5 C 0.169 3.831 6 C -0.066 4.066 7 C -0.111 4.111 8 N -0.165 5.165 9 C -0.346 4.346 10 H 0.146 0.854 11 C -0.001 4.001 12 N -0.812 5.812 13 Si 1.029 2.971 14 H -0.262 1.262 15 H -0.271 1.271 16 H -0.240 1.240 17 N -0.153 5.153 18 N -0.359 5.359 19 H 0.046 0.954 20 H 0.076 0.924 21 H 0.053 0.947 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.334 0.666 27 H 0.031 0.969 28 H 0.095 0.905 29 H 0.189 0.811 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 0.079 -9.281 11.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.035 4.035 3 C -0.237 4.237 4 N -0.320 5.320 5 C 0.039 3.961 6 C -0.215 4.215 7 C -0.265 4.265 8 N 0.062 4.938 9 C -0.482 4.482 10 H 0.163 0.837 11 C -0.216 4.216 12 N -0.439 5.439 13 Si 0.846 3.154 14 H -0.187 1.187 15 H -0.196 1.196 16 H -0.163 1.163 17 N -0.129 5.129 18 N -0.218 5.218 19 H 0.065 0.935 20 H 0.095 0.905 21 H 0.072 0.928 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.152 0.848 27 H 0.050 0.950 28 H 0.113 0.887 29 H 0.206 0.794 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.698 0.479 -8.079 9.898 hybrid contribution 0.404 -0.195 -0.045 0.450 sum -5.295 0.284 -8.125 9.702 Atomic orbital electron populations 1.21728 0.93625 1.01951 1.01816 1.21695 0.96420 0.92608 0.92799 1.22463 1.00773 0.97636 1.02790 1.60691 1.23949 1.40987 1.06334 1.19893 0.88366 0.96548 0.91321 1.21424 1.09340 0.91742 0.98967 1.23036 1.12985 0.99097 0.91386 1.47040 1.28315 1.08411 1.09996 1.20983 1.36439 0.84696 1.06040 0.83704 1.27108 0.93685 1.04397 0.96376 1.70308 1.26503 1.31160 1.15958 0.84446 0.80004 0.73927 0.77039 1.18686 1.19556 1.16321 1.82464 1.28209 0.84203 1.18056 1.73944 1.17287 1.28053 1.02522 0.93492 0.90532 0.92771 0.89751 0.90242 0.93040 0.93717 0.84849 0.95047 0.88691 0.79370 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.52 71.98 0.69 -2.11 16 2 C 0.07 1.79 3.20 44.91 0.14 1.93 16 3 C -0.18 -3.91 9.16 71.98 0.66 -3.25 16 4 N -0.69 -22.37 6.24 -495.57 -3.09 -25.46 16 5 C 0.17 6.06 6.01 85.56 0.51 6.57 16 6 C -0.07 -3.17 6.61 41.56 0.27 -2.89 16 7 C -0.11 -5.39 11.47 83.18 0.95 -4.44 16 8 N -0.17 -9.36 3.78 -190.21 -0.72 -10.08 16 9 C -0.35 -18.14 10.30 83.98 0.86 -17.28 16 10 H 0.15 6.57 7.84 -2.91 -0.02 6.54 16 11 C 0.00 -0.05 5.50 84.96 0.47 0.41 16 12 N -0.81 -45.72 11.91 21.66 0.26 -45.46 16 13 Si 1.03 36.82 29.56 68.60 2.03 38.85 16 14 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 15 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 16 H -0.24 -7.75 7.11 99.48 0.71 -7.04 16 17 N -0.15 -9.51 11.75 37.02 0.44 -9.07 16 18 N -0.36 -20.34 12.33 -48.99 -0.60 -20.95 16 19 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 20 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.08 1.87 7.80 -2.39 -0.02 1.85 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 25 H 0.04 1.07 7.45 -2.38 -0.02 1.06 16 26 H 0.33 11.93 8.46 -89.70 -0.76 11.17 16 27 H 0.03 1.11 7.44 -2.39 -0.02 1.10 16 28 H 0.09 2.92 8.05 -2.39 -0.02 2.90 16 29 H 0.19 7.50 8.06 -2.91 -0.02 7.47 16 30 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 Total: -1.00 -68.83 262.75 3.25 -65.59 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.37 Total: 27.64 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 4.56 Total: -21.05 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -3.72 Total: -111.03 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Total: -68.83 3.25 -65.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082018456.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.495 kcal (2) G-P(sol) polarization free energy of solvation -68.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds