Wall clock time and date at job start Sun Mar 29 2020 21:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35944 * 117.00656 * 2 1 4 4 C 1.38734 * 120.02603 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.97120 * 179.97438 * 4 3 2 6 6 C 1.38482 * 120.03175 * 359.97438 * 5 4 3 7 7 F 1.35101 * 119.97206 * 179.97438 * 6 5 4 8 8 C 1.38432 * 120.05577 * 359.78943 * 6 5 4 9 9 C 1.38172 * 120.03031 * 0.46314 * 8 6 5 10 10 C 1.50703 * 120.01277 * 179.79239 * 9 8 6 11 11 C 1.50701 * 109.47064 * 264.72240 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 H 1.08996 * 109.47161 * 59.99848 * 1 2 3 20 20 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47039 * 299.99874 * 1 2 3 22 22 H 1.08004 * 120.01233 * 359.97438 * 4 3 2 23 23 H 1.08005 * 119.98847 * 179.97438 * 5 4 3 24 24 H 1.07999 * 119.98211 * 180.23340 * 8 6 5 25 25 H 1.09002 * 109.47152 * 144.72333 * 10 9 8 26 26 H 1.09001 * 109.46980 * 24.72433 * 10 9 8 27 27 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9197 3.6051 0.0011 6 6 3.3027 3.6769 0.0016 7 9 3.9161 4.8806 0.0016 8 6 4.0572 2.5162 0.0060 9 6 3.4311 1.2845 0.0002 10 6 4.2529 0.0212 0.0003 11 6 4.4231 -0.4674 -1.4151 12 1 3.9808 0.0821 -2.2330 13 6 5.1443 -1.6154 -1.6661 14 7 5.6833 -2.2842 -0.6702 15 14 5.3558 -2.2206 -3.4206 16 1 6.0473 -1.1800 -4.2233 17 1 6.1655 -3.4655 -3.4205 18 1 4.0225 -2.4979 -4.0128 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 0.2127 2.3195 0.0005 23 1 1.3323 4.5114 0.0011 24 1 5.1356 2.5736 0.0102 25 1 3.7453 -0.7424 0.5897 26 1 5.2317 0.2246 0.4347 27 1 6.1904 -3.0920 -0.8468 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082529538.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:18 Heat of formation + Delta-G solvation = -86.936853 kcal Electronic energy + Delta-G solvation = -13403.619399 eV Core-core repulsion = 10847.261936 eV Total energy + Delta-G solvation = -2556.357463 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.75674 -41.01761 -38.11943 -35.45716 -33.19112 -30.71544 -29.13400 -27.88011 -25.40753 -23.15528 -22.31382 -18.90253 -18.50335 -17.93743 -17.77231 -16.66248 -16.49328 -16.25512 -15.53091 -15.28119 -14.46468 -14.35299 -14.16841 -13.67929 -13.22299 -13.07781 -12.78342 -12.59686 -12.44785 -12.16660 -11.75883 -11.55178 -11.29316 -10.58121 -9.85104 -8.90122 -8.17220 -6.29770 0.28898 0.35517 1.39492 1.42769 1.50789 2.40202 2.54472 2.72347 3.13120 3.38939 3.83083 3.89791 4.22556 4.34413 4.48186 4.50366 4.75623 4.77696 4.97123 5.10958 5.18886 5.27938 5.37402 5.73235 5.76792 5.89852 6.18051 6.63021 6.80328 7.37138 8.92092 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.028992 B = 0.010160 C = 0.008410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.550174 B = 2755.207868 C = 3328.459545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.107 3.893 4 C -0.173 4.173 5 C -0.120 4.120 6 C 0.047 3.953 7 F -0.148 7.148 8 C -0.132 4.132 9 C -0.080 4.080 10 C 0.069 3.931 11 C -0.521 4.521 12 H 0.051 0.949 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.964 3.036 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.268 1.268 19 H 0.068 0.932 20 H 0.108 0.892 21 H 0.073 0.927 22 H 0.172 0.828 23 H 0.170 0.830 24 H 0.129 0.871 25 H 0.007 0.993 26 H 0.003 0.997 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 8.749 0.722 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.061 3.939 4 C -0.191 4.191 5 C -0.139 4.139 6 C 0.028 3.972 7 F -0.127 7.127 8 C -0.151 4.151 9 C -0.080 4.080 10 C 0.032 3.968 11 C -0.559 4.559 12 H 0.069 0.931 13 C -0.193 4.193 14 N -0.571 5.571 15 Si 0.789 3.211 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.193 1.193 19 H 0.087 0.913 20 H 0.126 0.874 21 H 0.092 0.908 22 H 0.189 0.811 23 H 0.187 0.813 24 H 0.147 0.853 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.862 8.444 0.767 13.779 hybrid contribution 0.529 -0.348 -0.628 0.892 sum -10.333 8.096 0.139 13.128 Atomic orbital electron populations 1.23372 0.76823 1.05228 1.02502 1.86259 1.23168 1.26749 1.88299 1.19072 0.91536 0.85472 0.97833 1.21335 1.01484 0.90056 1.06222 1.21095 0.91596 0.99640 1.01561 1.17627 0.91761 0.79625 1.08198 1.91432 1.83722 1.42889 1.94618 1.20869 1.00661 0.90493 1.03095 1.19683 0.92293 0.96032 1.00029 1.17880 0.92770 0.89559 0.96601 1.21252 1.32812 1.09285 0.92573 0.93104 1.25895 0.95132 0.96606 1.01713 1.70074 1.35817 1.18031 1.33200 0.85514 0.78504 0.77760 0.79357 1.19308 1.20425 1.19308 0.91341 0.87382 0.90814 0.81102 0.81298 0.85343 0.97441 0.97858 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.36 9.81 113.37 1.11 1.48 15 2 O -0.33 -13.07 9.63 -92.92 -0.89 -13.96 15 3 C 0.11 4.17 6.66 22.49 0.15 4.32 15 4 C -0.17 -4.99 9.04 22.36 0.20 -4.79 15 5 C -0.12 -3.37 10.02 22.30 0.22 -3.15 15 6 C 0.05 1.62 7.30 22.37 0.16 1.78 15 7 F -0.15 -4.88 17.27 44.97 0.78 -4.10 15 8 C -0.13 -5.40 9.65 22.30 0.22 -5.19 15 9 C -0.08 -3.64 5.08 -19.77 -0.10 -3.74 15 10 C 0.07 3.83 4.83 29.10 0.14 3.97 15 11 C -0.52 -30.69 9.09 25.60 0.23 -30.46 15 12 H 0.05 2.95 7.74 -2.91 -0.02 2.93 15 13 C 0.00 0.26 5.46 84.66 0.46 0.72 15 14 N -0.93 -57.34 13.29 21.45 0.28 -57.05 15 15 Si 0.96 45.17 29.54 68.60 2.03 47.19 15 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 15 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 15 19 H 0.07 1.40 7.66 -2.39 -0.02 1.38 15 20 H 0.11 2.30 8.14 -2.39 -0.02 2.28 15 21 H 0.07 1.40 7.66 -2.39 -0.02 1.38 15 22 H 0.17 3.44 6.30 -2.91 -0.02 3.42 15 23 H 0.17 3.33 8.06 -2.91 -0.02 3.31 15 24 H 0.13 5.24 8.06 -2.91 -0.02 5.22 15 25 H 0.01 0.44 7.69 -2.39 -0.02 0.42 15 26 H 0.00 0.18 8.05 -2.39 -0.02 0.16 15 27 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 Total: -1.00 -68.83 245.64 6.16 -62.67 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: 1.17 Total: 0.31 kcal Atomic # 6 Polarization: -37.86 SS G_CDS: 2.80 Total: -35.06 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.28 Total: -57.05 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.89 Total: -13.96 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.78 Total: -4.10 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -68.83 6.16 -62.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082529538.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.270 kcal (2) G-P(sol) polarization free energy of solvation -68.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds