Wall clock time and date at job start Sun Mar 29 2020 21:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46905 * 111.00079 * 2 1 4 4 C 1.50703 * 109.46787 * 66.04729 * 3 2 1 5 5 H 1.07994 * 120.00014 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99842 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00149 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99764 * 0.02562 * 6 4 3 9 9 H 1.48492 * 109.47313 * 90.00114 * 8 6 4 10 10 H 1.48502 * 109.46599 * 210.00129 * 8 6 4 11 11 H 1.48497 * 109.47010 * 329.99931 * 8 6 4 12 12 C 1.46895 * 110.99811 * 236.04968 * 2 1 3 13 13 C 1.50699 * 109.47061 * 293.95317 * 12 2 1 14 14 N 1.30832 * 125.96108 * 90.02481 * 13 12 2 15 15 C 1.33244 * 109.83031 * 179.97438 * 14 13 12 16 16 N 1.30715 * 108.94545 * 359.97438 * 15 14 13 17 17 N 1.34430 * 125.96160 * 270.00167 * 13 12 2 18 18 C 1.46499 * 126.82518 * 0.02562 * 17 13 12 19 19 H 1.08997 * 109.46959 * 183.95324 * 1 2 3 20 20 H 1.09007 * 109.46573 * 303.95360 * 1 2 3 21 21 H 1.08995 * 109.46901 * 63.94904 * 1 2 3 22 22 H 1.08994 * 109.46917 * 186.04765 * 3 2 1 23 23 H 1.08997 * 109.47169 * 306.04736 * 3 2 1 24 24 H 0.96993 * 120.00328 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.47315 * 173.95721 * 12 2 1 26 26 H 1.09002 * 109.47431 * 53.94897 * 12 2 1 27 27 H 1.08005 * 125.52896 * 179.74108 * 15 14 13 28 28 H 1.09002 * 109.46976 * 90.00079 * 18 17 13 29 29 H 1.08997 * 109.47563 * 210.00558 * 18 17 13 30 30 H 1.09004 * 109.46586 * 330.00311 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0278 3.3491 1.5290 7 7 1.7154 3.9386 2.6623 8 14 3.0010 4.2758 0.2314 9 1 2.0644 4.9804 -0.6804 10 1 3.8882 5.2666 0.8920 11 1 3.8239 3.3170 -0.5486 12 6 1.9954 -0.7659 -1.1376 13 6 1.6369 -2.2203 -0.9729 14 7 0.5508 -2.7989 -1.4171 15 6 0.5623 -4.0913 -1.0931 16 7 1.6611 -4.3543 -0.4357 17 7 2.3774 -3.1497 -0.3444 18 6 3.6742 -2.9465 0.3062 19 1 -0.3633 -1.0252 0.0708 20 1 -0.3633 0.5740 0.8525 21 1 -0.3633 0.4513 -0.9232 22 1 3.0797 1.3444 -0.1083 23 1 1.5612 1.9274 -0.8309 24 1 1.9906 4.8544 2.8247 25 1 3.0797 -0.6611 -1.1757 26 1 1.5610 -0.3872 -2.0628 27 1 -0.2125 -4.8051 -1.3314 28 1 3.5184 -2.6787 1.3513 29 1 4.2572 -3.8657 0.2496 30 1 4.2119 -2.1436 -0.1983 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083971304.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:42 Heat of formation + Delta-G solvation = 101.289902 kcal Electronic energy + Delta-G solvation = -13795.950639 eV Core-core repulsion = 11435.801108 eV Total energy + Delta-G solvation = -2360.149531 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.89458 -36.84486 -33.87060 -32.69054 -31.33400 -28.30778 -27.41297 -26.68766 -23.89609 -21.79310 -20.74879 -19.82559 -17.00804 -16.68449 -15.95041 -14.84714 -14.70356 -14.33525 -14.26360 -13.69652 -13.04942 -12.98633 -12.60193 -12.36923 -11.85919 -11.54345 -11.30632 -11.01907 -10.77967 -10.37230 -9.95736 -9.82505 -9.51945 -9.40643 -9.34873 -8.64496 -7.59708 -6.11294 -4.09866 1.78032 2.50136 3.10988 3.23528 3.31033 3.31712 4.27406 4.35481 4.63844 4.85677 4.97552 5.19099 5.21030 5.29400 5.54271 5.73050 5.79614 6.13411 6.26837 6.43168 6.60720 6.66905 6.77502 6.86917 6.96490 7.44887 7.73089 7.85543 8.30042 8.55815 8.97061 9.48964 11.01665 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.051433 B = 0.007535 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.261823 B = 3714.971346 C = 3823.651876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.526 5.526 3 C 0.163 3.837 4 C -0.512 4.512 5 H 0.081 0.919 6 C 0.070 3.930 7 N -0.898 5.898 8 Si 0.876 3.124 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.123 3.877 13 C 0.303 3.697 14 N -0.547 5.547 15 C 0.194 3.806 16 N -0.333 5.333 17 N -0.370 5.370 18 C 0.099 3.901 19 H 0.054 0.946 20 H 0.080 0.920 21 H 0.019 0.981 22 H 0.030 0.970 23 H -0.010 1.010 24 H 0.265 0.735 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.213 0.787 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 -11.038 -7.706 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.252 5.252 3 C 0.037 3.963 4 C -0.550 4.550 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.008 4.008 13 C 0.026 3.974 14 N -0.275 5.275 15 C -0.109 4.109 16 N -0.161 5.161 17 N -0.160 5.160 18 C -0.043 4.043 19 H 0.073 0.927 20 H 0.099 0.901 21 H 0.037 0.963 22 H 0.048 0.952 23 H 0.007 0.993 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.230 0.770 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.065 -11.628 -7.025 13.926 hybrid contribution 0.344 1.079 -1.220 1.665 sum 3.409 -10.548 -8.244 13.815 Atomic orbital electron populations 1.22294 0.87014 1.00813 1.01059 1.62010 1.08711 1.16683 1.37763 1.20235 0.95193 0.83227 0.97597 1.20978 1.35901 0.97319 1.00814 0.90068 1.24891 0.95724 0.97275 0.95341 1.69883 1.46604 1.13310 1.23868 0.86862 0.80609 0.80133 0.82106 1.20240 1.21100 1.19176 1.20611 1.00766 0.83864 0.95596 1.24335 0.87619 0.94431 0.91037 1.70504 1.21408 1.07079 1.28544 1.25863 0.96025 0.93118 0.95894 1.77958 1.08633 1.04585 1.24960 1.50157 1.18181 1.06021 1.41642 1.21945 0.80107 1.03257 0.98986 0.92732 0.90099 0.96286 0.95205 0.99255 0.92546 0.89177 0.91722 0.77019 0.89540 0.89539 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.18 60.07 0.55 1.28 16 2 N -0.53 -10.67 4.74 -245.82 -1.17 -11.83 16 3 C 0.16 3.74 3.79 -4.97 -0.02 3.72 16 4 C -0.51 -14.06 9.01 -34.44 -0.31 -14.37 16 5 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 8 Si 0.88 20.64 27.47 -169.99 -4.67 15.97 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 12 C 0.12 2.02 5.29 -4.98 -0.03 2.00 16 13 C 0.30 5.03 6.61 -155.69 -1.03 4.00 16 14 N -0.55 -9.24 10.46 -11.97 -0.13 -9.37 16 15 C 0.19 2.87 13.03 -91.81 -1.20 1.67 16 16 N -0.33 -5.27 12.70 29.29 0.37 -4.90 16 17 N -0.37 -5.71 4.04 -65.10 -0.26 -5.98 16 18 C 0.10 1.14 11.33 59.85 0.68 1.82 16 19 H 0.05 1.05 6.73 -51.93 -0.35 0.70 16 20 H 0.08 1.77 6.76 -51.92 -0.35 1.41 16 21 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.03 0.67 6.99 -51.93 -0.36 0.30 16 23 H -0.01 -0.23 7.55 -51.93 -0.39 -0.63 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.09 1.29 6.92 -51.93 -0.36 0.93 16 26 H 0.06 1.04 8.12 -51.93 -0.42 0.61 16 27 H 0.21 2.21 8.06 -52.48 -0.42 1.79 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.90 7.11 -51.93 -0.37 0.54 16 LS Contribution 256.16 15.07 3.86 3.86 Total: -1.00 -32.06 256.16 -6.52 -38.58 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -3.85 Total: -2.19 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.45 Total: 1.98 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.41 Total: -58.20 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.06 -6.52 -38.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083971304.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.869 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds