Wall clock time and date at job start Sun Mar 29 2020 21:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46905 * 111.00079 * 2 1 4 4 C 1.50703 * 109.46787 * 66.04729 * 3 2 1 5 5 H 1.07994 * 120.00014 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99842 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00149 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99764 * 0.02562 * 6 4 3 9 9 H 1.48492 * 109.47313 * 90.00114 * 8 6 4 10 10 H 1.48502 * 109.46599 * 210.00129 * 8 6 4 11 11 H 1.48497 * 109.47010 * 329.99931 * 8 6 4 12 12 C 1.46895 * 110.99811 * 236.04968 * 2 1 3 13 13 C 1.50699 * 109.47061 * 293.95317 * 12 2 1 14 14 N 1.30832 * 125.96108 * 90.02481 * 13 12 2 15 15 C 1.33244 * 109.83031 * 179.97438 * 14 13 12 16 16 N 1.30715 * 108.94545 * 359.97438 * 15 14 13 17 17 N 1.34430 * 125.96160 * 270.00167 * 13 12 2 18 18 C 1.46499 * 126.82518 * 0.02562 * 17 13 12 19 19 H 1.08997 * 109.46959 * 183.95324 * 1 2 3 20 20 H 1.09007 * 109.46573 * 303.95360 * 1 2 3 21 21 H 1.08995 * 109.46901 * 63.94904 * 1 2 3 22 22 H 1.08994 * 109.46917 * 186.04765 * 3 2 1 23 23 H 1.08997 * 109.47169 * 306.04736 * 3 2 1 24 24 H 0.96993 * 120.00328 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.47315 * 173.95721 * 12 2 1 26 26 H 1.09002 * 109.47431 * 53.94897 * 12 2 1 27 27 H 1.08005 * 125.52896 * 179.74108 * 15 14 13 28 28 H 1.09002 * 109.46976 * 90.00079 * 18 17 13 29 29 H 1.08997 * 109.47563 * 210.00558 * 18 17 13 30 30 H 1.09004 * 109.46586 * 330.00311 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0278 3.3491 1.5290 7 7 1.7154 3.9386 2.6623 8 14 3.0010 4.2758 0.2314 9 1 2.0644 4.9804 -0.6804 10 1 3.8882 5.2666 0.8920 11 1 3.8239 3.3170 -0.5486 12 6 1.9954 -0.7659 -1.1376 13 6 1.6369 -2.2203 -0.9729 14 7 0.5508 -2.7989 -1.4171 15 6 0.5623 -4.0913 -1.0931 16 7 1.6611 -4.3543 -0.4357 17 7 2.3774 -3.1497 -0.3444 18 6 3.6742 -2.9465 0.3062 19 1 -0.3633 -1.0252 0.0708 20 1 -0.3633 0.5740 0.8525 21 1 -0.3633 0.4513 -0.9232 22 1 3.0797 1.3444 -0.1083 23 1 1.5612 1.9274 -0.8309 24 1 1.9906 4.8544 2.8247 25 1 3.0797 -0.6611 -1.1757 26 1 1.5610 -0.3872 -2.0628 27 1 -0.2125 -4.8051 -1.3314 28 1 3.5184 -2.6787 1.3513 29 1 4.2572 -3.8657 0.2496 30 1 4.2119 -2.1436 -0.1983 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083971304.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:42 Heat of formation + Delta-G solvation = 78.626632 kcal Electronic energy + Delta-G solvation = -13796.933392 eV Core-core repulsion = 11435.801108 eV Total energy + Delta-G solvation = -2361.132284 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.06620 -38.43086 -35.00089 -34.67366 -32.71211 -30.03918 -28.81093 -27.87485 -25.62707 -22.92821 -22.46116 -21.12585 -18.97955 -17.90004 -17.24517 -16.50593 -16.12871 -15.82608 -15.65416 -15.18455 -14.44582 -14.18508 -14.00953 -13.83196 -13.48286 -13.03288 -12.67321 -12.58751 -12.55832 -12.13126 -11.76010 -11.48115 -11.03553 -10.77409 -10.69805 -10.54414 -9.19073 -8.25045 -6.29746 0.58259 1.40877 1.41849 1.44001 1.52475 1.92553 2.38295 3.04178 3.09363 3.40606 3.63780 3.85074 4.20330 4.35067 4.42721 4.55340 4.58471 4.67914 4.73835 4.91282 5.02436 5.15677 5.31535 5.51489 5.52896 5.78882 5.93983 6.17345 6.57346 6.76944 7.12452 7.33703 8.91680 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.051433 B = 0.007535 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.261823 B = 3714.971346 C = 3823.651876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.540 5.540 3 C 0.173 3.827 4 C -0.519 4.519 5 H 0.033 0.967 6 C 0.007 3.993 7 N -0.951 5.951 8 Si 0.949 3.051 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.236 1.236 12 C 0.127 3.873 13 C 0.289 3.711 14 N -0.568 5.568 15 C 0.192 3.808 16 N -0.349 5.349 17 N -0.372 5.372 18 C 0.090 3.910 19 H 0.059 0.941 20 H 0.049 0.951 21 H 0.027 0.973 22 H 0.048 0.952 23 H -0.004 1.004 24 H 0.266 0.734 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.248 0.752 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 -11.584 -9.826 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.265 5.265 3 C 0.046 3.954 4 C -0.557 4.557 5 H 0.052 0.948 6 C -0.190 4.190 7 N -0.591 5.591 8 Si 0.772 3.228 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.159 1.159 12 C -0.004 4.004 13 C 0.012 3.988 14 N -0.297 5.297 15 C -0.110 4.110 16 N -0.178 5.178 17 N -0.162 5.162 18 C -0.051 4.051 19 H 0.078 0.922 20 H 0.068 0.932 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.014 0.986 24 H 0.075 0.925 25 H 0.135 0.865 26 H 0.092 0.908 27 H 0.264 0.736 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.474 -12.210 -9.152 15.902 hybrid contribution -0.155 1.141 -0.481 1.248 sum 4.320 -11.069 -9.633 15.297 Atomic orbital electron populations 1.22110 0.87341 1.00539 1.00047 1.61829 1.08568 1.15656 1.40467 1.20017 0.96116 0.84316 0.94918 1.21226 1.34997 0.97594 1.01868 0.94830 1.25878 0.97014 0.98362 0.97761 1.70056 1.48580 1.13904 1.26601 0.85696 0.79177 0.78903 0.79044 1.19640 1.21113 1.15890 1.20656 1.02257 0.83230 0.94222 1.24299 0.88125 0.94587 0.91834 1.70483 1.21877 1.08121 1.29260 1.26585 0.96430 0.93053 0.94947 1.77926 1.09222 1.05189 1.25511 1.50418 1.18958 1.05623 1.41199 1.22247 0.79043 1.05189 0.98574 0.92246 0.93207 0.95404 0.93430 0.98592 0.92465 0.86504 0.90783 0.73631 0.90201 0.87430 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.91 9.18 127.69 1.17 3.08 16 2 N -0.54 -21.14 4.74 -931.64 -4.42 -25.56 16 3 C 0.17 7.59 3.79 85.56 0.32 7.91 16 4 C -0.52 -28.83 9.01 25.60 0.23 -28.59 16 5 H 0.03 2.13 7.37 -2.91 -0.02 2.11 16 6 C 0.01 0.39 5.47 84.66 0.46 0.86 16 7 N -0.95 -58.37 13.96 21.45 0.30 -58.07 16 8 Si 0.95 41.50 27.47 68.60 1.88 43.38 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16 12 C 0.13 3.83 5.29 85.56 0.45 4.28 16 13 C 0.29 8.98 6.61 138.23 0.91 9.89 16 14 N -0.57 -18.15 10.46 -191.77 -2.01 -20.16 16 15 C 0.19 5.30 13.03 180.76 2.36 7.65 16 16 N -0.35 -10.43 12.70 -61.24 -0.78 -11.21 16 17 N -0.37 -10.71 4.04 -359.87 -1.45 -12.17 16 18 C 0.09 1.87 11.33 127.77 1.45 3.31 16 19 H 0.06 2.28 6.73 -2.39 -0.02 2.26 16 20 H 0.05 2.25 6.76 -2.38 -0.02 2.24 16 21 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.05 1.94 6.99 -2.39 -0.02 1.93 16 23 H 0.00 -0.16 7.55 -2.39 -0.02 -0.17 16 24 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 25 H 0.12 2.87 6.92 -2.39 -0.02 2.85 16 26 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 27 H 0.25 4.51 8.06 -2.91 -0.02 4.48 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.11 1.84 7.11 -2.39 -0.02 1.82 16 Total: -1.00 -69.75 256.16 1.96 -67.79 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 1.07 Total: 7.59 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 7.36 Total: 8.39 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -8.36 Total: -127.16 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.88 Total: 43.38 kcal Total: -69.75 1.96 -67.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083971304.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.419 kcal (2) G-P(sol) polarization free energy of solvation -69.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds