Wall clock time and date at job start Sun Mar 29 2020 21:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47325 * 2 1 4 4 C 1.36935 * 120.00035 * 264.12104 * 3 2 1 5 5 H 1.08001 * 119.99937 * 188.04283 * 4 3 2 6 6 C 1.38814 * 119.99952 * 8.03777 * 4 3 2 7 7 N 1.31614 * 120.00325 * 25.60581 * 6 4 3 8 8 Si 1.86803 * 119.99910 * 205.61135 * 6 4 3 9 9 H 1.48492 * 109.47353 * 84.98264 * 8 6 4 10 10 H 1.48495 * 109.47119 * 204.98730 * 8 6 4 11 11 H 1.48506 * 109.47035 * 324.98114 * 8 6 4 12 12 C 1.46498 * 119.99796 * 84.11556 * 3 2 1 13 13 C 1.50694 * 109.47472 * 270.00025 * 12 3 2 14 14 N 1.30833 * 125.96153 * 90.02475 * 13 12 3 15 15 C 1.33240 * 109.83139 * 179.97438 * 14 13 12 16 16 N 1.30721 * 108.94397 * 0.02562 * 15 14 13 17 17 N 1.34432 * 125.96551 * 270.00457 * 13 12 3 18 18 C 1.46510 * 126.81973 * 0.02562 * 17 13 12 19 19 H 1.09005 * 109.47040 * 59.99820 * 1 2 3 20 20 H 1.08996 * 109.47161 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46930 * 300.00076 * 1 2 3 22 22 H 1.09002 * 109.46930 * 239.99924 * 2 1 3 23 23 H 1.09003 * 109.46755 * 119.99735 * 2 1 3 24 24 H 0.96995 * 120.00605 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.46903 * 150.00175 * 12 3 2 26 26 H 1.09000 * 109.47658 * 30.00502 * 12 3 2 27 27 H 1.07997 * 125.52914 * 179.73500 * 15 14 13 28 28 H 1.09005 * 109.46771 * 90.00124 * 18 17 13 29 29 H 1.08994 * 109.47331 * 210.00222 * 18 17 13 30 30 H 1.08997 * 109.46998 * 330.00544 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3612 1.9862 -1.1797 5 1 2.8417 2.9534 -1.1708 6 6 2.0911 1.3564 -2.3868 7 7 1.1096 0.4833 -2.4685 8 14 3.1208 1.7479 -3.8955 9 1 4.3437 0.9056 -3.8923 10 1 2.3300 1.4679 -5.1208 11 1 3.5071 3.1817 -3.8726 12 6 2.1399 2.1151 1.2620 13 6 0.8492 2.8379 1.5492 14 7 -0.1656 2.3600 2.2227 15 6 -1.1370 3.2700 2.2828 16 7 -0.7522 4.3443 1.6451 17 7 0.5396 4.0864 1.1585 18 6 1.3824 4.9969 0.3793 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 0.9211 0.0429 -3.3119 25 1 2.9519 2.8382 1.1851 26 1 2.3521 1.4154 2.0704 27 1 -2.0897 3.1395 2.7743 28 1 1.1893 4.8508 -0.6835 29 1 1.1533 6.0270 0.6520 30 1 2.4318 4.7902 0.5896 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083971319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:18 Heat of formation + Delta-G solvation = 120.989409 kcal Electronic energy + Delta-G solvation = -14462.008834 eV Core-core repulsion = 12102.713538 eV Total energy + Delta-G solvation = -2359.295296 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.28043 -36.14586 -33.36792 -31.97572 -30.43242 -29.18690 -26.97666 -25.76347 -23.32463 -21.27635 -20.73050 -19.51589 -16.82730 -16.29178 -15.42101 -14.81405 -14.17319 -13.76939 -13.44512 -13.35189 -12.70227 -12.58844 -11.92582 -11.74802 -11.49792 -11.17599 -10.88018 -10.63727 -10.47736 -10.08058 -9.89594 -9.44792 -9.23473 -8.94867 -8.77108 -8.39740 -7.09944 -5.89771 -3.23343 2.36268 3.04429 3.30635 3.37954 3.39882 3.68159 4.39826 4.89796 5.09806 5.23514 5.47054 5.55174 5.61900 5.78067 5.93996 6.32957 6.35498 6.66540 6.97398 7.00821 7.14379 7.21351 7.28752 7.52930 7.56663 7.79783 8.12838 8.22701 8.87661 9.08849 9.68874 10.14265 11.12255 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.034982 B = 0.012171 C = 0.010376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.221803 B = 2299.963559 C = 2697.859883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 N -0.575 5.575 4 C -0.267 4.267 5 H 0.076 0.924 6 C 0.006 3.994 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.285 1.285 10 H -0.293 1.293 11 H -0.281 1.281 12 C 0.214 3.786 13 C 0.282 3.718 14 N -0.552 5.552 15 C 0.187 3.813 16 N -0.350 5.350 17 N -0.376 5.376 18 C 0.106 3.894 19 H 0.079 0.921 20 H 0.016 0.984 21 H 0.040 0.960 22 H 0.087 0.913 23 H 0.009 0.991 24 H 0.255 0.745 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.204 0.796 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 4.353 5.449 7.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.043 3.957 3 N -0.295 5.295 4 C -0.395 4.395 5 H 0.094 0.906 6 C -0.194 4.194 7 N -0.526 5.526 8 Si 0.730 3.270 9 H -0.212 1.212 10 H -0.219 1.219 11 H -0.206 1.206 12 C 0.082 3.918 13 C 0.003 3.997 14 N -0.282 5.282 15 C -0.116 4.116 16 N -0.179 5.179 17 N -0.165 5.165 18 C -0.037 4.037 19 H 0.098 0.902 20 H 0.035 0.965 21 H 0.059 0.941 22 H 0.105 0.895 23 H 0.027 0.973 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.221 0.779 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.329 4.616 5.281 7.139 hybrid contribution 0.203 0.272 -1.098 1.150 sum 1.532 4.888 4.183 6.613 Atomic orbital electron populations 1.22338 0.98812 0.98349 1.02338 1.20902 0.92993 0.83437 0.98368 1.44544 1.73941 1.09943 1.01039 1.19258 1.32682 1.04168 0.83429 0.90640 1.24808 0.97370 0.99662 0.97524 1.70220 1.26293 1.30920 1.25191 0.86346 0.80384 0.77948 0.82336 1.21239 1.21900 1.20623 1.19701 0.87209 0.94038 0.90878 1.26793 0.99980 0.82821 0.90094 1.70438 1.01347 1.31519 1.24849 1.25707 0.99685 0.87821 0.98392 1.77809 0.95119 1.25122 1.19894 1.50116 1.12111 1.12998 1.41309 1.21800 0.93269 0.92496 0.96134 0.90204 0.96500 0.94111 0.89502 0.97268 0.93494 0.91397 0.90341 0.77911 0.90049 0.90395 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 9.58 37.16 0.36 -3.53 16 2 C 0.17 4.02 5.64 -4.04 -0.02 3.99 16 3 N -0.57 -13.52 2.52 -174.61 -0.44 -13.96 16 4 C -0.27 -6.66 9.70 -15.06 -0.15 -6.81 16 5 H 0.08 1.78 7.94 -52.49 -0.42 1.36 16 6 C 0.01 0.15 4.89 -17.43 -0.09 0.06 16 7 N -0.88 -24.15 8.62 55.49 0.48 -23.67 16 8 Si 0.90 20.51 29.62 -169.99 -5.04 15.47 16 9 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 C 0.21 4.22 6.02 -5.20 -0.03 4.19 16 13 C 0.28 5.84 7.07 -155.69 -1.10 4.74 16 14 N -0.55 -11.64 9.43 -11.97 -0.11 -11.75 16 15 C 0.19 3.58 13.03 -91.81 -1.20 2.38 16 16 N -0.35 -7.05 12.70 29.29 0.37 -6.68 16 17 N -0.38 -7.41 4.04 -65.09 -0.26 -7.67 16 18 C 0.11 1.66 11.33 59.85 0.68 2.34 16 19 H 0.08 2.22 6.33 -51.93 -0.33 1.89 16 20 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.04 0.98 5.88 -51.93 -0.31 0.67 16 22 H 0.09 2.28 5.85 -51.93 -0.30 1.98 16 23 H 0.01 0.20 7.98 -51.93 -0.41 -0.21 16 24 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.07 1.18 7.01 -51.93 -0.36 0.81 16 26 H 0.08 1.44 7.95 -51.93 -0.41 1.03 16 27 H 0.20 3.00 8.06 -52.49 -0.42 2.58 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.19 7.11 -51.93 -0.37 0.82 16 LS Contribution 252.36 15.07 3.80 3.80 Total: -1.00 -30.08 252.36 -6.49 -36.57 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -3.74 Total: 0.52 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -1.55 Total: 7.37 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.03 Total: -63.73 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.04 Total: 15.47 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.08 -6.49 -36.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083971319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.557 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds