Wall clock time and date at job start Sun Mar 29 2020 21:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46880 * 2 1 4 4 N 1.40442 * 126.82964 * 87.54308 * 3 2 1 5 5 C 1.30712 * 106.79297 * 180.02562 * 4 3 2 6 6 N 1.33236 * 108.94745 * 0.24211 * 5 4 3 7 7 C 1.30828 * 109.83094 * 359.59160 * 6 5 4 8 8 C 1.50699 * 125.96520 * 180.12317 * 7 6 5 9 9 N 1.46506 * 109.47177 * 84.74051 * 8 7 6 10 10 C 1.46499 * 119.99832 * 270.08808 * 9 8 7 11 11 C 1.36935 * 119.99605 * 90.08429 * 9 8 7 12 12 H 1.08005 * 119.99789 * 21.65179 * 11 9 8 13 13 C 1.38808 * 120.00010 * 201.64481 * 11 9 8 14 14 N 1.31625 * 119.99898 * 12.03318 * 13 11 9 15 15 Si 1.86793 * 120.00160 * 192.03548 * 13 11 9 16 16 H 1.48503 * 109.47559 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47734 * 120.00080 * 15 13 11 18 18 H 1.48506 * 109.47325 * 239.99994 * 15 13 11 19 19 H 1.09001 * 109.46871 * 184.90259 * 1 2 3 20 20 H 1.09008 * 109.47067 * 304.90318 * 1 2 3 21 21 H 1.09001 * 109.47115 * 64.89655 * 1 2 3 22 22 H 1.08988 * 109.47408 * 239.99358 * 2 1 3 23 23 H 1.09003 * 109.46639 * 119.99117 * 2 1 3 24 24 H 1.08006 * 125.52525 * 179.97438 * 5 4 3 25 25 H 1.08997 * 109.47347 * 204.74576 * 8 7 6 26 26 H 1.09005 * 109.46935 * 324.74845 * 8 7 6 27 27 H 1.08998 * 109.46871 * 94.22695 * 10 9 8 28 28 H 1.09008 * 109.46606 * 214.21887 * 10 9 8 29 29 H 1.09000 * 109.47406 * 334.22019 * 10 9 8 30 30 H 0.96997 * 119.99633 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2535 2.1910 1.1231 5 6 2.6803 3.3426 0.6756 6 7 2.7204 3.3016 -0.6555 7 6 2.3298 2.1256 -1.0752 8 6 2.2383 1.6847 -2.5134 9 7 3.5480 1.2044 -2.9612 10 6 4.5041 2.1377 -3.5620 11 6 3.8783 -0.1167 -2.8180 12 1 3.1010 -0.8595 -2.7144 13 6 5.2119 -0.5014 -2.8061 14 7 6.1579 0.4069 -2.6935 15 14 5.6643 -2.3080 -2.9499 16 1 4.4266 -3.1208 -3.0635 17 1 6.5044 -2.5135 -4.1570 18 1 6.4215 -2.7264 -1.7428 19 1 -0.3633 -1.0239 0.0878 20 1 -0.3633 0.5881 0.8429 21 1 -0.3633 0.4360 -0.9306 22 1 1.8934 -0.5139 -0.8898 23 1 1.8933 -0.5137 0.8901 24 1 2.9520 4.1913 1.2858 25 1 1.5071 0.8812 -2.6013 26 1 1.9291 2.5268 -3.1326 27 1 5.1804 2.5104 -2.7927 28 1 5.0786 1.6233 -4.3326 29 1 3.9649 2.9735 -4.0079 30 1 7.0898 0.1381 -2.6856 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083978554.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:06 Heat of formation + Delta-G solvation = 109.284276 kcal Electronic energy + Delta-G solvation = -14242.957269 eV Core-core repulsion = 11883.154400 eV Total energy + Delta-G solvation = -2359.802869 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.25337 -35.74577 -34.42317 -31.90458 -30.23110 -29.55946 -26.51872 -25.86382 -23.58548 -21.70260 -21.01051 -19.40166 -16.85016 -16.40265 -15.18112 -14.90949 -14.45882 -13.77749 -13.60670 -13.43809 -13.05800 -12.54876 -12.04070 -11.96670 -11.47752 -11.27652 -10.98673 -10.84782 -10.68243 -10.36756 -10.09214 -10.04558 -9.21664 -8.99295 -8.76375 -8.69129 -6.99132 -5.86999 -3.35607 2.39881 3.03284 3.28703 3.34667 3.37486 3.73615 4.37904 4.93791 5.03486 5.24945 5.29703 5.39677 5.52282 5.58636 5.73005 5.86463 5.98779 6.18625 6.33686 6.41393 6.79618 7.04307 7.21697 7.34677 7.59619 7.63991 7.79146 8.22087 8.92573 9.06339 9.67230 10.16466 11.16244 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.030528 B = 0.011766 C = 0.010082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.976546 B = 2379.216403 C = 2776.468713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 N -0.372 5.372 4 N -0.349 5.349 5 C 0.187 3.813 6 N -0.555 5.555 7 C 0.285 3.715 8 C 0.214 3.786 9 N -0.579 5.579 10 C 0.164 3.836 11 C -0.271 4.271 12 H 0.072 0.928 13 C 0.009 3.991 14 N -0.894 5.894 15 Si 0.906 3.094 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.290 1.290 19 H 0.073 0.927 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.107 0.893 23 H 0.086 0.914 24 H 0.204 0.796 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.031 0.969 28 H 0.049 0.951 29 H 0.005 0.995 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 -0.047 2.173 9.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.002 3.998 3 N -0.163 5.163 4 N -0.178 5.178 5 C -0.116 4.116 6 N -0.284 5.284 7 C 0.006 3.994 8 C 0.082 3.918 9 N -0.300 5.300 10 C 0.020 3.980 11 C -0.400 4.400 12 H 0.090 0.910 13 C -0.191 4.191 14 N -0.537 5.537 15 Si 0.735 3.265 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.216 1.216 19 H 0.092 0.908 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.125 0.875 23 H 0.105 0.895 24 H 0.221 0.779 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.023 0.977 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.666 -0.063 2.681 9.072 hybrid contribution 0.606 -1.058 0.227 1.241 sum -8.060 -1.121 2.908 8.642 Atomic orbital electron populations 1.22158 0.94819 1.02614 1.02709 1.21693 0.94359 0.78548 1.05188 1.50280 1.49486 1.12523 1.03978 1.77777 1.25972 1.04360 1.09719 1.25697 0.98605 0.96044 0.91229 1.70445 1.26011 1.21153 1.10789 1.26756 0.91628 0.86166 0.94897 1.19770 0.90807 0.97923 0.83280 1.44188 1.13393 1.06365 1.66040 1.20864 0.90836 0.89749 0.96540 1.19240 0.91306 0.82551 1.46909 0.90998 1.25123 0.96219 0.97819 0.99922 1.70118 0.99574 1.31767 1.52270 0.86176 0.78410 0.84380 0.77498 1.20047 1.21267 1.21634 0.90800 0.92189 0.92045 0.87460 0.89533 0.77934 0.91528 0.90500 0.95013 0.93274 0.97687 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.12 2.02 6.86 -4.04 -0.03 2.00 16 3 N -0.37 -7.49 3.64 -58.34 -0.21 -7.70 16 4 N -0.35 -7.19 12.70 29.29 0.37 -6.82 16 5 C 0.19 3.71 13.03 -91.82 -1.20 2.52 16 6 N -0.55 -12.25 11.19 -11.97 -0.13 -12.38 16 7 C 0.28 6.10 7.57 -155.69 -1.18 4.92 16 8 C 0.21 4.35 5.91 -5.19 -0.03 4.32 16 9 N -0.58 -14.17 2.91 -182.50 -0.53 -14.70 16 10 C 0.16 4.08 9.01 59.85 0.54 4.62 16 11 C -0.27 -7.00 9.37 -15.06 -0.14 -7.14 16 12 H 0.07 1.75 7.23 -52.48 -0.38 1.37 16 13 C 0.01 0.26 5.12 -17.43 -0.09 0.17 16 14 N -0.89 -25.80 10.58 55.49 0.59 -25.21 16 15 Si 0.91 21.01 29.57 -169.99 -5.03 15.99 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 20 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.11 1.81 6.53 -51.94 -0.34 1.47 16 23 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 24 H 0.20 3.11 8.06 -52.48 -0.42 2.69 16 25 H 0.07 1.19 7.34 -51.93 -0.38 0.81 16 26 H 0.08 1.43 7.86 -51.93 -0.41 1.03 16 27 H 0.03 0.88 7.43 -51.93 -0.39 0.50 16 28 H 0.05 1.28 7.16 -51.92 -0.37 0.91 16 29 H 0.00 0.10 7.84 -51.93 -0.41 -0.31 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 259.33 15.07 3.91 3.91 Total: -1.00 -31.76 259.33 -6.70 -38.46 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -3.92 Total: -1.25 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -1.74 Total: 9.71 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: 0.08 Total: -66.81 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.76 -6.70 -38.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083978554.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.743 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds