Wall clock time and date at job start Sun Mar 29 2020 21:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46880 * 2 1 4 4 N 1.40442 * 126.82964 * 87.54308 * 3 2 1 5 5 C 1.30712 * 106.79297 * 180.02562 * 4 3 2 6 6 N 1.33236 * 108.94745 * 0.24211 * 5 4 3 7 7 C 1.30828 * 109.83094 * 359.59160 * 6 5 4 8 8 C 1.50699 * 125.96520 * 180.12317 * 7 6 5 9 9 N 1.46506 * 109.47177 * 84.74051 * 8 7 6 10 10 C 1.46499 * 119.99832 * 270.08808 * 9 8 7 11 11 C 1.36935 * 119.99605 * 90.08429 * 9 8 7 12 12 H 1.08005 * 119.99789 * 21.65179 * 11 9 8 13 13 C 1.38808 * 120.00010 * 201.64481 * 11 9 8 14 14 N 1.31625 * 119.99898 * 12.03318 * 13 11 9 15 15 Si 1.86793 * 120.00160 * 192.03548 * 13 11 9 16 16 H 1.48503 * 109.47559 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47734 * 120.00080 * 15 13 11 18 18 H 1.48506 * 109.47325 * 239.99994 * 15 13 11 19 19 H 1.09001 * 109.46871 * 184.90259 * 1 2 3 20 20 H 1.09008 * 109.47067 * 304.90318 * 1 2 3 21 21 H 1.09001 * 109.47115 * 64.89655 * 1 2 3 22 22 H 1.08988 * 109.47408 * 239.99358 * 2 1 3 23 23 H 1.09003 * 109.46639 * 119.99117 * 2 1 3 24 24 H 1.08006 * 125.52525 * 179.97438 * 5 4 3 25 25 H 1.08997 * 109.47347 * 204.74576 * 8 7 6 26 26 H 1.09005 * 109.46935 * 324.74845 * 8 7 6 27 27 H 1.08998 * 109.46871 * 94.22695 * 10 9 8 28 28 H 1.09008 * 109.46606 * 214.21887 * 10 9 8 29 29 H 1.09000 * 109.47406 * 334.22019 * 10 9 8 30 30 H 0.96997 * 119.99633 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2535 2.1910 1.1231 5 6 2.6803 3.3426 0.6756 6 7 2.7204 3.3016 -0.6555 7 6 2.3298 2.1256 -1.0752 8 6 2.2383 1.6847 -2.5134 9 7 3.5480 1.2044 -2.9612 10 6 4.5041 2.1377 -3.5620 11 6 3.8783 -0.1167 -2.8180 12 1 3.1010 -0.8595 -2.7144 13 6 5.2119 -0.5014 -2.8061 14 7 6.1579 0.4069 -2.6935 15 14 5.6643 -2.3080 -2.9499 16 1 4.4266 -3.1208 -3.0635 17 1 6.5044 -2.5135 -4.1570 18 1 6.4215 -2.7264 -1.7428 19 1 -0.3633 -1.0239 0.0878 20 1 -0.3633 0.5881 0.8429 21 1 -0.3633 0.4360 -0.9306 22 1 1.8934 -0.5139 -0.8898 23 1 1.8933 -0.5137 0.8901 24 1 2.9520 4.1913 1.2858 25 1 1.5071 0.8812 -2.6013 26 1 1.9291 2.5268 -3.1326 27 1 5.1804 2.5104 -2.7927 28 1 5.0786 1.6233 -4.3326 29 1 3.9649 2.9735 -4.0079 30 1 7.0898 0.1381 -2.6856 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083978554.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:06 Heat of formation + Delta-G solvation = 90.011934 kcal Electronic energy + Delta-G solvation = -14243.792980 eV Core-core repulsion = 11883.154400 eV Total energy + Delta-G solvation = -2360.638580 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.82593 -37.59816 -35.80615 -33.75984 -31.95300 -30.93706 -28.28784 -27.80851 -24.92064 -23.56760 -22.52254 -20.99324 -18.78809 -17.93269 -16.91101 -16.57841 -15.87735 -15.54174 -15.16969 -15.00057 -14.79433 -13.90825 -13.73260 -13.13375 -13.07308 -12.97174 -12.84499 -12.57025 -12.23528 -12.07919 -11.92436 -11.89252 -10.83324 -10.71516 -10.54336 -10.34924 -8.97971 -7.88098 -5.39320 0.81482 1.45578 1.47790 1.57471 1.60518 2.13061 2.49064 3.25314 3.52796 3.67576 3.72120 4.08036 4.14057 4.21759 4.42110 4.70449 4.73602 4.84431 4.88089 4.94451 5.20484 5.31450 5.52603 5.60793 5.68731 5.72931 6.08874 6.23732 7.05252 7.34416 7.74031 8.20071 9.15270 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.030528 B = 0.011766 C = 0.010082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.976546 B = 2379.216403 C = 2776.468713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.115 3.885 3 N -0.373 5.373 4 N -0.363 5.363 5 C 0.181 3.819 6 N -0.581 5.581 7 C 0.269 3.731 8 C 0.215 3.785 9 N -0.594 5.594 10 C 0.181 3.819 11 C -0.265 4.265 12 H 0.091 0.909 13 C -0.051 4.051 14 N -0.937 5.937 15 Si 0.968 3.032 16 H -0.252 1.252 17 H -0.292 1.292 18 H -0.301 1.301 19 H 0.105 0.895 20 H 0.053 0.947 21 H 0.065 0.935 22 H 0.102 0.898 23 H 0.090 0.910 24 H 0.239 0.761 25 H 0.094 0.906 26 H 0.094 0.906 27 H -0.007 1.007 28 H 0.027 0.973 29 H 0.033 0.967 30 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.748 -0.964 2.337 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.007 4.007 3 N -0.164 5.164 4 N -0.192 5.192 5 C -0.121 4.121 6 N -0.311 5.311 7 C -0.010 4.010 8 C 0.085 3.915 9 N -0.316 5.316 10 C 0.036 3.964 11 C -0.395 4.395 12 H 0.108 0.892 13 C -0.247 4.247 14 N -0.583 5.583 15 Si 0.796 3.204 16 H -0.175 1.175 17 H -0.219 1.219 18 H -0.228 1.228 19 H 0.123 0.877 20 H 0.072 0.928 21 H 0.084 0.916 22 H 0.120 0.880 23 H 0.108 0.892 24 H 0.255 0.745 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.011 0.989 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.611 -1.001 2.852 11.033 hybrid contribution 1.092 -0.717 0.229 1.326 sum -9.519 -1.718 3.081 10.152 Atomic orbital electron populations 1.22086 0.91701 1.04569 1.02639 1.22017 0.96878 0.76696 1.05063 1.50564 1.48833 1.13503 1.03502 1.77734 1.26375 1.04811 1.10268 1.26436 0.97864 0.96906 0.90909 1.70420 1.26548 1.22027 1.12062 1.26689 0.92239 0.86605 0.95471 1.19950 0.89178 0.99536 0.82881 1.44333 1.14315 1.06106 1.66800 1.20547 0.90660 0.90342 0.94813 1.19704 0.91578 0.83696 1.44507 0.89179 1.25914 0.96492 1.01504 1.00779 1.70310 0.99409 1.33610 1.54930 0.85186 0.78552 0.80250 0.76373 1.17542 1.21920 1.22849 0.87670 0.92830 0.91607 0.88029 0.89180 0.74480 0.88758 0.88776 0.98899 0.95399 0.94835 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 10.24 71.98 0.74 -2.59 16 2 C 0.11 3.46 6.86 86.38 0.59 4.05 16 3 N -0.37 -14.40 3.64 -338.49 -1.23 -15.63 16 4 N -0.36 -14.42 12.70 -61.24 -0.78 -15.19 16 5 C 0.18 6.94 13.03 180.77 2.36 9.29 16 6 N -0.58 -25.00 11.19 -191.77 -2.15 -27.14 16 7 C 0.27 11.13 7.57 138.22 1.05 12.18 16 8 C 0.21 8.27 5.91 85.63 0.51 8.78 16 9 N -0.59 -28.45 2.91 -731.29 -2.13 -30.58 16 10 C 0.18 9.05 9.01 127.77 1.15 10.20 16 11 C -0.27 -13.38 9.37 84.03 0.79 -12.59 16 12 H 0.09 4.13 7.23 -2.91 -0.02 4.11 16 13 C -0.05 -2.76 5.12 84.86 0.43 -2.33 16 14 N -0.94 -55.30 10.58 21.65 0.23 -55.07 16 15 Si 0.97 43.03 29.57 68.60 2.03 45.06 16 16 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 17 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 19 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 20 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 21 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.10 3.18 6.53 -2.39 -0.02 3.16 16 23 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 24 H 0.24 6.83 8.06 -2.91 -0.02 6.80 16 25 H 0.09 3.07 7.34 -2.39 -0.02 3.06 16 26 H 0.09 3.28 7.86 -2.38 -0.02 3.26 16 27 H -0.01 -0.43 7.43 -2.39 -0.02 -0.45 16 28 H 0.03 1.47 7.16 -2.38 -0.02 1.45 16 29 H 0.03 1.43 7.84 -2.39 -0.02 1.42 16 30 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -68.01 259.33 4.71 -63.31 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.12 Total: 8.26 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 7.61 Total: 26.99 kcal Atomic # 7 Polarization: -137.56 SS G_CDS: -6.05 Total: -143.62 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -68.01 4.71 -63.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083978554.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.318 kcal (2) G-P(sol) polarization free energy of solvation -68.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds