Wall clock time and date at job start Sun Mar 29 2020 21:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46903 * 2 1 4 4 H 1.08994 * 109.47466 * 304.24951 * 3 2 1 5 5 C 1.50703 * 109.46815 * 184.24669 * 3 2 1 6 6 H 1.08000 * 119.99974 * 240.00160 * 5 3 2 7 7 C 1.37875 * 119.99999 * 60.00821 * 5 3 2 8 8 N 1.31519 * 120.00063 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00174 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47156 * 89.99829 * 9 7 5 11 11 H 1.48501 * 109.46803 * 209.99617 * 9 7 5 12 12 H 1.48501 * 109.46870 * 329.99611 * 9 7 5 13 13 N 1.46905 * 109.47038 * 64.25433 * 3 2 1 14 14 C 1.46896 * 111.00061 * 205.86716 * 13 3 2 15 15 C 1.50700 * 109.47299 * 174.79857 * 14 13 3 16 16 C 1.34328 * 126.44319 * 90.00144 * 15 14 13 17 17 N 1.34475 * 107.66882 * 179.73927 * 16 15 14 18 18 C 1.30248 * 108.70292 * 0.25532 * 17 16 15 19 19 O 1.33974 * 108.75970 * 0.02562 * 18 17 16 20 20 H 1.09001 * 109.46740 * 174.89735 * 1 2 3 21 21 H 1.08997 * 109.46510 * 294.89683 * 1 2 3 22 22 H 1.09000 * 109.47361 * 54.89400 * 1 2 3 23 23 H 1.09001 * 109.46991 * 240.00552 * 2 1 3 24 24 H 1.09000 * 109.47382 * 120.00323 * 2 1 3 25 25 H 0.96994 * 120.00259 * 180.02562 * 8 7 5 26 26 H 1.00903 * 111.00353 * 81.90790 * 13 3 2 27 27 H 1.09002 * 109.47163 * 54.79548 * 14 13 3 28 28 H 1.09001 * 109.47319 * 294.80184 * 14 13 3 29 29 H 1.08001 * 126.16379 * 359.97438 * 16 15 14 30 30 H 1.07998 * 125.62465 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9779 -0.8494 5 6 3.5433 1.4438 -0.1052 6 1 4.1390 1.8917 0.6764 7 6 4.1583 0.8732 -1.1994 8 7 3.4330 0.3274 -2.1511 9 14 6.0217 0.8754 -1.3302 10 1 6.5639 -0.3533 -0.6966 11 1 6.4174 0.9103 -2.7611 12 1 6.5651 2.0710 -0.6370 13 7 1.6360 2.1047 1.2475 14 6 1.5393 3.5590 1.0642 15 6 1.0014 4.1893 2.3230 16 6 1.7241 4.6372 3.3629 17 7 0.8665 5.1293 4.2742 18 6 -0.3475 4.9893 3.8236 19 8 -0.2953 4.4062 2.6185 20 1 -0.3633 -1.0236 -0.0914 21 1 -0.3632 0.4326 0.9322 22 1 -0.3634 0.5910 -0.8407 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.8656 -0.0744 -2.9206 26 1 2.2687 1.8763 1.9996 27 1 0.8681 3.7766 0.2334 28 1 2.5278 3.9645 0.8485 29 1 2.8003 4.6106 3.4496 30 1 -1.2479 5.2932 4.3367 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084415019.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:27 Heat of formation + Delta-G solvation = 14.638238 kcal Electronic energy + Delta-G solvation = -13692.796163 eV Core-core repulsion = 11296.596383 eV Total energy + Delta-G solvation = -2396.199780 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.01116 -36.40394 -34.42318 -33.05948 -31.47497 -29.55881 -26.66562 -24.52900 -22.58146 -22.38730 -20.90443 -19.59618 -17.34971 -16.75265 -16.29649 -14.94224 -14.73470 -14.09702 -13.91018 -13.48771 -13.12108 -12.71003 -12.11370 -11.84552 -11.28809 -11.20538 -11.10745 -10.99487 -10.71912 -10.36892 -10.18631 -9.70199 -9.64162 -9.17331 -8.58206 -8.46178 -7.44848 -6.08187 -4.21937 1.75521 2.93896 3.06567 3.22793 3.30409 3.32314 4.33046 4.44776 5.09646 5.19000 5.36624 5.52517 5.68831 5.94221 6.22137 6.32893 6.40529 6.46408 6.56879 6.66349 7.03043 7.12713 7.32351 7.48871 7.69287 7.91019 7.96926 8.00798 8.18799 8.49513 8.88788 9.46483 10.92445 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.036527 B = 0.008187 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.374722 B = 3419.195190 C = 4018.565518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.035 0.965 5 C -0.552 4.552 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.685 5.685 14 C 0.142 3.858 15 C -0.008 4.008 16 C -0.057 4.057 17 N -0.491 5.491 18 C 0.149 3.851 19 O -0.199 6.199 20 H 0.025 0.975 21 H 0.046 0.954 22 H 0.037 0.963 23 H 0.092 0.908 24 H 0.032 0.968 25 H 0.263 0.737 26 H 0.333 0.667 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.180 0.820 30 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 5.570 6.211 9.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.053 0.947 5 C -0.591 4.591 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.315 5.315 14 C 0.012 3.988 15 C -0.062 4.062 16 C -0.196 4.196 17 N -0.220 5.220 18 C -0.078 4.078 19 O -0.084 6.084 20 H 0.045 0.955 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.110 0.890 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.149 0.851 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.197 0.803 30 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.534 5.619 6.446 10.185 hybrid contribution 1.813 -0.069 -0.672 1.935 sum -3.720 5.550 5.774 8.830 Atomic orbital electron populations 1.21699 0.98908 0.98425 1.00414 1.21505 0.92162 0.98914 1.01871 1.19210 0.92965 0.91328 0.85609 0.94680 1.21844 0.92463 1.38692 1.06076 0.92657 1.24929 0.98152 0.94786 0.95534 1.69872 1.35049 1.37645 1.09537 0.86622 0.85773 0.78485 0.77285 1.20569 1.21140 1.19997 1.60917 1.55960 1.04093 1.10563 1.20276 0.98942 0.90509 0.89092 1.23980 0.80060 1.01822 1.00317 1.23024 1.00952 1.04553 0.91058 1.70363 1.00494 1.20291 1.30821 1.27899 0.98525 0.98377 0.83002 1.84463 1.29413 1.60172 1.34333 0.95537 0.93523 0.94376 0.88959 0.94951 0.92725 0.85066 0.89983 0.91413 0.80325 0.74076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.73 37.16 0.36 -2.44 16 2 C -0.11 -2.48 5.45 -26.73 -0.15 -2.63 16 3 C 0.22 5.13 1.98 -68.86 -0.14 4.99 16 4 H 0.04 0.91 7.70 -51.93 -0.40 0.51 16 5 C -0.55 -14.22 8.47 -34.44 -0.29 -14.52 16 6 H 0.06 1.40 7.73 -52.49 -0.41 1.00 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.22 11.30 55.43 0.63 -23.59 16 9 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.68 -13.89 5.72 -109.22 -0.62 -14.52 16 14 C 0.14 2.54 6.06 -4.98 -0.03 2.51 16 15 C -0.01 -0.13 6.94 -35.69 -0.25 -0.37 16 16 C -0.06 -0.90 11.80 -17.77 -0.21 -1.11 16 17 N -0.49 -7.66 11.29 -14.97 -0.17 -7.83 16 18 C 0.15 1.95 13.23 52.09 0.69 2.64 16 19 O -0.20 -3.15 10.78 5.36 0.06 -3.09 16 20 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.92 7.88 -51.93 -0.41 0.51 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.09 2.40 5.97 -51.93 -0.31 2.09 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.33 6.70 8.45 -39.29 -0.33 6.36 16 27 H 0.08 1.48 7.92 -51.93 -0.41 1.07 16 28 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 29 H 0.18 2.51 8.06 -52.49 -0.42 2.09 16 30 H 0.24 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 261.52 15.07 3.94 3.94 Total: -1.00 -28.51 261.52 -5.23 -33.74 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -3.94 Total: 5.07 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -0.11 Total: -9.19 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.17 Total: -45.94 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: 0.06 Total: -3.09 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.51 -5.23 -33.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084415019.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.377 kcal (2) G-P(sol) polarization free energy of solvation -28.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds