Wall clock time and date at job start Sun Mar 29 2020 21:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46903 * 2 1 4 4 H 1.08994 * 109.47466 * 304.24951 * 3 2 1 5 5 C 1.50703 * 109.46815 * 184.24669 * 3 2 1 6 6 H 1.08000 * 119.99974 * 240.00160 * 5 3 2 7 7 C 1.37875 * 119.99999 * 60.00821 * 5 3 2 8 8 N 1.31519 * 120.00063 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00174 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47156 * 89.99829 * 9 7 5 11 11 H 1.48501 * 109.46803 * 209.99617 * 9 7 5 12 12 H 1.48501 * 109.46870 * 329.99611 * 9 7 5 13 13 N 1.46905 * 109.47038 * 64.25433 * 3 2 1 14 14 C 1.46896 * 111.00061 * 205.86716 * 13 3 2 15 15 C 1.50700 * 109.47299 * 174.79857 * 14 13 3 16 16 C 1.34328 * 126.44319 * 90.00144 * 15 14 13 17 17 N 1.34475 * 107.66882 * 179.73927 * 16 15 14 18 18 C 1.30248 * 108.70292 * 0.25532 * 17 16 15 19 19 O 1.33974 * 108.75970 * 0.02562 * 18 17 16 20 20 H 1.09001 * 109.46740 * 174.89735 * 1 2 3 21 21 H 1.08997 * 109.46510 * 294.89683 * 1 2 3 22 22 H 1.09000 * 109.47361 * 54.89400 * 1 2 3 23 23 H 1.09001 * 109.46991 * 240.00552 * 2 1 3 24 24 H 1.09000 * 109.47382 * 120.00323 * 2 1 3 25 25 H 0.96994 * 120.00259 * 180.02562 * 8 7 5 26 26 H 1.00903 * 111.00353 * 81.90790 * 13 3 2 27 27 H 1.09002 * 109.47163 * 54.79548 * 14 13 3 28 28 H 1.09001 * 109.47319 * 294.80184 * 14 13 3 29 29 H 1.08001 * 126.16379 * 359.97438 * 16 15 14 30 30 H 1.07998 * 125.62465 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9779 -0.8494 5 6 3.5433 1.4438 -0.1052 6 1 4.1390 1.8917 0.6764 7 6 4.1583 0.8732 -1.1994 8 7 3.4330 0.3274 -2.1511 9 14 6.0217 0.8754 -1.3302 10 1 6.5639 -0.3533 -0.6966 11 1 6.4174 0.9103 -2.7611 12 1 6.5651 2.0710 -0.6370 13 7 1.6360 2.1047 1.2475 14 6 1.5393 3.5590 1.0642 15 6 1.0014 4.1893 2.3230 16 6 1.7241 4.6372 3.3629 17 7 0.8665 5.1293 4.2742 18 6 -0.3475 4.9893 3.8236 19 8 -0.2953 4.4062 2.6185 20 1 -0.3633 -1.0236 -0.0914 21 1 -0.3632 0.4326 0.9322 22 1 -0.3634 0.5910 -0.8407 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.8656 -0.0744 -2.9206 26 1 2.2687 1.8763 1.9996 27 1 0.8681 3.7766 0.2334 28 1 2.5278 3.9645 0.8485 29 1 2.8003 4.6106 3.4496 30 1 -1.2479 5.2932 4.3367 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084415019.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:27 Heat of formation + Delta-G solvation = -6.341358 kcal Electronic energy + Delta-G solvation = -13693.705907 eV Core-core repulsion = 11296.596383 eV Total energy + Delta-G solvation = -2397.109524 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.18662 -38.14991 -35.60802 -34.80519 -33.28952 -31.00346 -28.41928 -26.11431 -24.33708 -23.54736 -22.18618 -21.43824 -18.82235 -18.36732 -17.53677 -16.78307 -16.22029 -15.62008 -15.37157 -15.06296 -14.48798 -14.37554 -13.73073 -13.46878 -13.09289 -13.03742 -12.76338 -12.50922 -12.29823 -12.10178 -11.63029 -11.54110 -11.36584 -11.06052 -10.47318 -9.82447 -9.15710 -8.07075 -6.28705 0.57819 1.40462 1.42860 1.50862 1.78286 1.92794 2.40949 3.14674 3.47595 3.67580 4.09186 4.15078 4.33836 4.59485 4.66407 4.75097 4.91603 4.92601 5.07212 5.17866 5.40604 5.47795 5.49468 5.60352 5.74746 6.06108 6.13370 6.30500 6.69853 6.78229 6.95507 7.43115 8.90772 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.036527 B = 0.008187 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.374722 B = 3419.195190 C = 4018.565518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.223 3.777 4 H 0.007 0.993 5 C -0.563 4.563 6 H 0.056 0.944 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.680 5.680 14 C 0.149 3.851 15 C -0.031 4.031 16 C -0.052 4.052 17 N -0.521 5.521 18 C 0.175 3.825 19 O -0.211 6.211 20 H 0.044 0.956 21 H 0.053 0.947 22 H 0.032 0.968 23 H 0.064 0.936 24 H 0.028 0.972 25 H 0.263 0.737 26 H 0.334 0.666 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.190 0.810 30 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 6.175 7.464 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.025 0.975 5 C -0.602 4.602 6 H 0.074 0.926 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.310 5.310 14 C 0.019 3.981 15 C -0.084 4.084 16 C -0.190 4.190 17 N -0.250 5.250 18 C -0.051 4.051 19 O -0.098 6.098 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.051 0.949 23 H 0.082 0.918 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.207 0.793 30 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges -5.874 6.235 7.716 11.528 hybrid contribution 1.838 -0.196 -0.986 2.095 sum -4.036 6.039 6.730 9.902 Atomic orbital electron populations 1.21557 0.96524 0.99622 1.00516 1.21381 0.94282 0.98300 1.00237 1.18974 0.91886 0.91528 0.86117 0.97463 1.22169 0.93721 1.38275 1.06018 0.92587 1.25649 1.02130 0.94665 0.95400 1.69998 1.36548 1.38394 1.09975 0.85669 0.80993 0.78514 0.77114 1.20322 1.21085 1.19416 1.60817 1.55509 1.05658 1.08977 1.20092 0.98890 0.89025 0.90062 1.23533 0.80726 1.03934 1.00246 1.23246 1.01671 1.03438 0.90681 1.70417 1.01462 1.21818 1.31264 1.29136 0.99517 0.94977 0.81446 1.84458 1.28945 1.60780 1.35584 0.93673 0.92831 0.94853 0.91758 0.95282 0.92806 0.84884 0.90616 0.91676 0.79297 0.68988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.73 71.98 0.70 -4.29 16 2 C -0.10 -4.87 5.45 30.60 0.17 -4.70 16 3 C 0.22 10.71 1.98 44.17 0.09 10.80 16 4 H 0.01 0.39 7.70 -2.39 -0.02 0.38 16 5 C -0.56 -29.18 8.47 25.60 0.22 -28.96 16 6 H 0.06 2.83 7.73 -2.91 -0.02 2.81 16 7 C 0.02 1.17 5.29 84.65 0.45 1.61 16 8 N -0.91 -50.65 11.30 21.45 0.24 -50.40 16 9 Si 0.95 42.06 29.54 68.60 2.03 44.08 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 N -0.68 -27.46 5.72 -499.46 -2.86 -30.31 16 14 C 0.15 5.34 6.06 85.56 0.52 5.86 16 15 C -0.03 -0.98 6.94 24.79 0.17 -0.81 16 16 C -0.05 -1.58 11.80 83.39 0.98 -0.60 16 17 N -0.52 -15.03 11.29 -316.07 -3.57 -18.60 16 18 C 0.18 4.04 13.23 130.48 1.73 5.77 16 19 O -0.21 -6.26 10.78 -3.75 -0.04 -6.30 16 20 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.05 2.05 7.88 -2.39 -0.02 2.03 16 22 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.06 3.41 5.97 -2.39 -0.01 3.39 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.33 13.32 8.45 -89.69 -0.76 12.57 16 27 H 0.08 2.77 7.92 -2.39 -0.02 2.75 16 28 H 0.07 2.34 8.11 -2.39 -0.02 2.33 16 29 H 0.19 5.08 8.06 -2.91 -0.02 5.06 16 30 H 0.30 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -60.42 261.52 1.20 -59.22 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.38 Total: 17.65 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 5.02 Total: -15.33 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -6.18 Total: -99.32 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.04 Total: -6.30 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -60.42 1.20 -59.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084415019.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.882 kcal (2) G-P(sol) polarization free energy of solvation -60.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds