Wall clock time and date at job start Sun Mar 29 2020 21:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35955 * 117.00021 * 2 1 4 4 C 1.38658 * 120.06211 * 359.97438 * 3 2 1 5 5 C 1.38182 * 119.97019 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.09355 * 359.74123 * 5 4 3 7 7 C 1.38262 * 120.12460 * 0.51136 * 6 5 4 8 8 C 1.50700 * 119.98224 * 179.76960 * 7 6 5 9 9 C 1.50702 * 109.46869 * 264.72052 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.38327 * 120.03322 * 359.48915 * 7 6 5 18 18 F 1.35096 * 120.05288 * 180.23423 * 17 7 6 19 19 H 1.08998 * 109.47182 * 299.99746 * 1 2 3 20 20 H 1.08998 * 109.47191 * 59.99930 * 1 2 3 21 21 H 1.09003 * 109.46866 * 179.97438 * 1 2 3 22 22 H 1.07998 * 120.01639 * 359.97438 * 4 3 2 23 23 H 1.07993 * 119.95153 * 179.97438 * 5 4 3 24 24 H 1.07997 * 119.93982 * 180.27692 * 6 5 4 25 25 H 1.09004 * 109.47210 * 144.72345 * 8 7 6 26 26 H 1.08994 * 109.47551 * 24.71997 * 8 7 6 27 27 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9216 3.6053 -0.0011 6 6 3.3023 3.6777 0.0043 7 6 4.0579 2.5198 -0.0004 8 6 5.5626 2.6025 0.0003 9 6 6.0716 2.5055 -1.4149 10 1 5.3751 2.3954 -2.2329 11 6 7.4262 2.5635 -1.6658 12 7 8.2742 2.6979 -0.6697 13 14 8.0566 2.4509 -3.4206 14 1 6.9082 2.3050 -4.3507 15 1 8.8107 3.6856 -3.7557 16 1 8.9520 1.2734 -3.5504 17 6 3.4333 1.2855 0.0001 18 9 4.1713 0.1539 0.0003 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.2137 2.3200 -0.0014 23 1 1.3341 4.5114 -0.0019 24 1 3.7915 4.6405 0.0084 25 1 5.9713 1.7822 0.5904 26 1 5.8741 3.5526 0.4341 27 1 9.2272 2.7384 -0.8462 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084931305.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:24 Heat of formation + Delta-G solvation = -68.081832 kcal Electronic energy + Delta-G solvation = -13422.116496 eV Core-core repulsion = 10866.576648 eV Total energy + Delta-G solvation = -2555.539848 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.90169 -39.54332 -37.19546 -33.33879 -31.09917 -29.76953 -27.38167 -26.74776 -23.35506 -21.97322 -20.53888 -17.55788 -16.49503 -16.39524 -16.21667 -15.68365 -14.60184 -14.39400 -14.26164 -14.01876 -13.16199 -12.39458 -12.30652 -11.98263 -11.78848 -11.40362 -11.09414 -11.01225 -10.71953 -10.54895 -10.49959 -9.64762 -9.45755 -8.42237 -7.95050 -7.71064 -6.04017 -4.07591 1.74983 1.82491 3.31419 3.38669 3.43369 3.44885 4.15379 4.47358 4.85269 5.02987 5.19306 5.26477 5.31409 5.46586 5.53569 5.70247 5.81553 6.19922 6.46571 6.56314 6.82270 6.95935 7.21806 7.48505 7.67495 7.72808 7.90931 8.27755 8.95936 9.55865 11.06355 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.043540 B = 0.008585 C = 0.008073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.929069 B = 3260.828395 C = 3467.507771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.084 3.916 4 C -0.210 4.210 5 C -0.097 4.097 6 C -0.133 4.133 7 C -0.033 4.033 8 C 0.048 3.952 9 C -0.511 4.511 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.067 3.933 18 F -0.129 7.129 19 H 0.052 0.948 20 H 0.053 0.947 21 H 0.096 0.904 22 H 0.126 0.874 23 H 0.122 0.878 24 H 0.130 0.870 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.014 -0.504 1.661 14.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.228 6.228 3 C 0.039 3.961 4 C -0.229 4.229 5 C -0.115 4.115 6 C -0.151 4.151 7 C -0.034 4.034 8 C 0.011 3.989 9 C -0.549 4.549 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.047 3.953 18 F -0.107 7.107 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.114 0.886 22 H 0.144 0.856 23 H 0.140 0.860 24 H 0.148 0.852 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.716 -0.733 1.700 13.840 hybrid contribution 0.235 -0.118 -0.965 1.000 sum -13.481 -0.851 0.735 13.527 Atomic orbital electron populations 1.22988 0.78995 1.03459 1.01077 1.86116 1.20867 1.26541 1.89310 1.19027 0.90862 0.85090 1.01131 1.20842 0.99243 0.91743 1.11049 1.20878 0.94707 0.96573 0.99334 1.20929 0.92885 0.98295 1.03005 1.20705 1.00190 0.89875 0.92665 1.18359 0.83026 0.99033 0.98434 1.21017 0.91784 1.50579 0.91498 0.92404 1.24987 0.96788 0.95029 0.97387 1.69966 1.02440 1.49979 1.30798 0.86444 0.78893 0.77655 0.84530 1.19647 1.20910 1.20849 1.16916 0.85156 0.83433 1.09791 1.91467 1.76586 1.48555 1.94125 0.92903 0.92873 0.88592 0.85615 0.86010 0.85226 0.94599 0.94508 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.33 15 2 O -0.31 -5.40 10.36 -19.60 -0.20 -5.60 15 3 C 0.08 1.58 6.69 -39.18 -0.26 1.32 15 4 C -0.21 -3.28 9.04 -39.45 -0.36 -3.63 15 5 C -0.10 -1.51 10.04 -39.59 -0.40 -1.91 15 6 C -0.13 -2.51 9.67 -39.56 -0.38 -2.89 15 7 C -0.03 -0.75 5.07 -104.58 -0.53 -1.28 15 8 C 0.05 1.28 4.88 -29.03 -0.14 1.14 15 9 C -0.51 -14.68 9.09 -34.44 -0.31 -14.99 15 10 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 12 N -0.89 -26.72 13.29 55.43 0.74 -25.98 15 13 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 15 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 17 C 0.07 1.49 7.25 -39.30 -0.28 1.20 15 18 F -0.13 -3.13 16.41 2.25 0.04 -3.09 15 19 H 0.05 0.50 7.66 -51.93 -0.40 0.11 15 20 H 0.05 0.52 7.66 -51.93 -0.40 0.13 15 21 H 0.10 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.13 1.52 6.30 -52.49 -0.33 1.18 15 23 H 0.12 1.47 8.06 -52.49 -0.42 1.05 15 24 H 0.13 2.27 8.06 -52.49 -0.42 1.85 15 25 H 0.04 1.02 7.79 -51.93 -0.40 0.62 15 26 H 0.04 0.98 8.05 -51.93 -0.42 0.57 15 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 LS Contribution 245.70 15.07 3.70 3.70 Total: -1.00 -31.66 245.70 -5.28 -36.94 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: -2.76 Total: -4.79 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -1.77 Total: -18.10 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.20 Total: -5.60 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.09 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.66 -5.28 -36.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084931305.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.137 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds