Wall clock time and date at job start Sun Mar 29 2020 21:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35955 * 117.00021 * 2 1 4 4 C 1.38658 * 120.06211 * 359.97438 * 3 2 1 5 5 C 1.38182 * 119.97019 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.09355 * 359.74123 * 5 4 3 7 7 C 1.38262 * 120.12460 * 0.51136 * 6 5 4 8 8 C 1.50700 * 119.98224 * 179.76960 * 7 6 5 9 9 C 1.50702 * 109.46869 * 264.72052 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.38327 * 120.03322 * 359.48915 * 7 6 5 18 18 F 1.35096 * 120.05288 * 180.23423 * 17 7 6 19 19 H 1.08998 * 109.47182 * 299.99746 * 1 2 3 20 20 H 1.08998 * 109.47191 * 59.99930 * 1 2 3 21 21 H 1.09003 * 109.46866 * 179.97438 * 1 2 3 22 22 H 1.07998 * 120.01639 * 359.97438 * 4 3 2 23 23 H 1.07993 * 119.95153 * 179.97438 * 5 4 3 24 24 H 1.07997 * 119.93982 * 180.27692 * 6 5 4 25 25 H 1.09004 * 109.47210 * 144.72345 * 8 7 6 26 26 H 1.08994 * 109.47551 * 24.71997 * 8 7 6 27 27 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9216 3.6053 -0.0011 6 6 3.3023 3.6777 0.0043 7 6 4.0579 2.5198 -0.0004 8 6 5.5626 2.6025 0.0003 9 6 6.0716 2.5055 -1.4149 10 1 5.3751 2.3954 -2.2329 11 6 7.4262 2.5635 -1.6658 12 7 8.2742 2.6979 -0.6697 13 14 8.0566 2.4509 -3.4206 14 1 6.9082 2.3050 -4.3507 15 1 8.8107 3.6856 -3.7557 16 1 8.9520 1.2734 -3.5504 17 6 3.4333 1.2855 0.0001 18 9 4.1713 0.1539 0.0003 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.2137 2.3200 -0.0014 23 1 1.3341 4.5114 -0.0019 24 1 3.7915 4.6405 0.0084 25 1 5.9713 1.7822 0.5904 26 1 5.8741 3.5526 0.4341 27 1 9.2272 2.7384 -0.8462 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084931305.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:24 Heat of formation + Delta-G solvation = -88.360194 kcal Electronic energy + Delta-G solvation = -13422.995831 eV Core-core repulsion = 10866.576648 eV Total energy + Delta-G solvation = -2556.419183 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.63660 -40.86948 -38.59510 -35.38877 -32.90075 -31.11142 -29.04061 -28.00847 -25.32379 -23.39033 -22.11520 -18.97301 -18.56798 -17.95616 -17.70469 -17.00522 -16.58287 -15.92822 -15.59001 -15.37749 -14.68080 -14.43696 -14.01307 -13.39133 -13.30314 -13.07685 -12.75235 -12.56670 -12.36155 -12.18106 -12.02237 -11.53285 -11.47181 -10.64426 -9.55128 -9.12137 -8.24132 -6.37356 0.28991 0.39041 1.37353 1.38890 1.52260 2.26995 2.37631 2.73938 3.07357 3.44747 3.90630 4.05160 4.29520 4.40994 4.43815 4.46090 4.59709 4.74145 5.03586 5.17806 5.23549 5.31003 5.44309 5.67742 5.74473 5.82322 6.10499 6.42128 6.73070 7.30776 8.86411 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.043540 B = 0.008585 C = 0.008073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.929069 B = 3260.828395 C = 3467.507771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.340 6.340 3 C 0.088 3.912 4 C -0.191 4.191 5 C -0.073 4.073 6 C -0.143 4.143 7 C -0.065 4.065 8 C 0.057 3.943 9 C -0.530 4.530 10 H 0.052 0.948 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.969 3.031 14 H -0.266 1.266 15 H -0.269 1.269 16 H -0.278 1.278 17 C 0.020 3.980 18 F -0.156 7.156 19 H 0.074 0.926 20 H 0.071 0.929 21 H 0.118 0.882 22 H 0.175 0.825 23 H 0.173 0.827 24 H 0.136 0.864 25 H -0.004 1.004 26 H 0.021 0.979 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.941 0.398 0.617 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.042 3.958 4 C -0.209 4.209 5 C -0.091 4.091 6 C -0.161 4.161 7 C -0.066 4.066 8 C 0.020 3.980 9 C -0.568 4.568 10 H 0.070 0.930 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.793 3.207 14 H -0.190 1.190 15 H -0.194 1.194 16 H -0.203 1.203 17 C 0.000 4.000 18 F -0.135 7.135 19 H 0.092 0.908 20 H 0.089 0.911 21 H 0.136 0.864 22 H 0.193 0.807 23 H 0.191 0.809 24 H 0.154 0.846 25 H 0.015 0.985 26 H 0.039 0.961 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.667 0.169 0.662 16.681 hybrid contribution 0.976 -0.422 -0.579 1.211 sum -15.691 -0.253 0.083 15.693 Atomic orbital electron populations 1.23445 0.75586 1.05791 1.02902 1.86095 1.24341 1.26092 1.88961 1.19089 0.89624 0.86948 1.00093 1.21409 1.01407 0.90216 1.07901 1.21387 0.93212 0.98673 0.95787 1.21094 0.94651 0.97073 1.03312 1.20425 0.98002 0.91895 0.96299 1.18040 0.86622 0.96421 0.96870 1.21310 0.92288 1.50772 0.92402 0.93005 1.25941 0.96933 0.94350 1.02088 1.70084 1.02914 1.50629 1.33202 0.85341 0.78332 0.78167 0.78881 1.19022 1.19406 1.20321 1.17338 0.87097 0.82529 1.13019 1.91374 1.77608 1.49833 1.94720 0.90770 0.91057 0.86373 0.80733 0.80920 0.84576 0.98537 0.96065 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 15 2 O -0.34 -11.09 10.36 -93.05 -0.96 -12.05 15 3 C 0.09 3.18 6.69 22.53 0.15 3.33 15 4 C -0.19 -5.10 9.04 22.36 0.20 -4.90 15 5 C -0.07 -1.96 10.04 22.26 0.22 -1.74 15 6 C -0.14 -5.26 9.67 22.28 0.22 -5.04 15 7 C -0.07 -3.06 5.07 -19.84 -0.10 -3.16 15 8 C 0.06 3.25 4.88 29.10 0.14 3.39 15 9 C -0.53 -31.79 9.09 25.60 0.23 -31.55 15 10 H 0.05 3.08 7.74 -2.91 -0.02 3.06 15 11 C 0.01 0.31 5.46 84.66 0.46 0.77 15 12 N -0.93 -57.52 13.29 21.45 0.28 -57.24 15 13 Si 0.97 45.74 29.54 68.60 2.03 47.76 15 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 17 C 0.02 0.91 7.25 22.45 0.16 1.07 15 18 F -0.16 -8.13 16.41 44.97 0.74 -7.40 15 19 H 0.07 1.04 7.66 -2.39 -0.02 1.03 15 20 H 0.07 1.05 7.66 -2.39 -0.02 1.03 15 21 H 0.12 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.18 2.97 6.30 -2.91 -0.02 2.95 15 23 H 0.17 2.98 8.06 -2.91 -0.02 2.96 15 24 H 0.14 4.69 8.06 -2.91 -0.02 4.67 15 25 H 0.00 -0.23 7.79 -2.38 -0.02 -0.25 15 26 H 0.02 1.22 8.05 -2.39 -0.02 1.20 15 27 H 0.27 15.37 8.31 -92.70 -0.77 14.60 15 Total: -1.00 -73.46 245.70 6.06 -67.41 By element: Atomic # 1 Polarization: -3.23 SS G_CDS: 1.17 Total: -2.06 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 2.80 Total: -36.42 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.28 Total: -57.24 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.96 Total: -12.05 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 0.74 Total: -7.40 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -73.46 6.06 -67.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084931305.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.954 kcal (2) G-P(sol) polarization free energy of solvation -73.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds