Wall clock time and date at job start Sun Mar 29 2020 21:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30180 * 126.80260 * 2 1 4 4 O 1.20913 * 111.60140 * 180.24737 * 3 2 1 5 5 C 1.34040 * 111.57017 * 359.74675 * 4 3 2 6 6 C 1.50705 * 126.78046 * 179.97438 * 5 4 3 7 7 C 1.35450 * 106.44640 * 359.97438 * 5 4 3 8 8 C 1.50698 * 128.00987 * 179.97438 * 7 5 4 9 9 H 1.09008 * 109.46833 * 347.61567 * 8 7 5 10 10 C 1.52993 * 109.47160 * 107.61560 * 8 7 5 11 11 N 1.46502 * 109.47379 * 227.61914 * 8 7 5 12 12 C 1.36940 * 119.99995 * 161.97438 * 11 8 7 13 13 H 1.07995 * 119.99818 * 359.97438 * 12 11 8 14 14 C 1.38814 * 119.99775 * 179.97438 * 12 11 8 15 15 N 1.31619 * 119.99719 * 359.72355 * 14 12 11 16 16 Si 1.86800 * 119.99928 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47011 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.46907 * 120.00172 * 16 14 12 19 19 H 1.48499 * 109.46941 * 240.00198 * 16 14 12 20 20 H 1.08999 * 109.47319 * 275.76819 * 1 2 3 21 21 H 1.08998 * 109.46946 * 35.76343 * 1 2 3 22 22 H 1.09001 * 109.47490 * 155.76385 * 1 2 3 23 23 H 1.08997 * 109.46998 * 270.00004 * 6 5 4 24 24 H 1.09002 * 109.46464 * 29.99682 * 6 5 4 25 25 H 1.08998 * 109.47059 * 149.99528 * 6 5 4 26 26 H 1.09001 * 109.47294 * 300.00294 * 10 8 7 27 27 H 1.09000 * 109.47408 * 60.00520 * 10 8 7 28 28 H 1.09004 * 109.47269 * 180.02562 * 10 8 7 29 29 H 0.96996 * 119.99431 * 341.97505 * 11 8 7 30 30 H 0.97007 * 119.99478 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6068 -0.0033 6 6 4.9021 -1.3697 -0.0086 7 6 2.3539 -1.1320 0.0039 8 6 1.9589 -2.5863 0.0079 9 1 2.8313 -3.2003 -0.2163 10 6 1.4112 -2.9623 1.3861 11 7 0.9271 -2.8150 -1.0067 12 6 0.6726 -4.0853 -1.4502 13 1 1.2327 -4.9185 -1.0523 14 6 -0.3054 -4.3020 -2.4111 15 7 -0.9918 -3.2871 -2.8920 16 14 -0.6522 -6.0348 -3.0167 17 1 0.2453 -6.9913 -2.3204 18 1 -2.0668 -6.3850 -2.7313 19 1 -0.4103 -6.1054 -4.4801 20 1 -0.3634 0.1033 1.0224 21 1 -0.3633 0.8339 -0.6006 22 1 -0.3634 -0.9371 -0.4218 23 1 5.2102 -1.5554 -1.0375 24 1 5.6685 -0.7851 0.5004 25 1 4.7676 -2.3202 0.5077 26 1 2.1789 -2.7922 2.1410 27 1 0.5389 -2.3484 1.6103 28 1 1.1260 -4.0143 1.3891 29 1 0.4244 -2.0665 -1.3642 30 1 -1.6750 -3.4385 -3.5638 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086110450.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:26 Heat of formation + Delta-G solvation = 62.160830 kcal Electronic energy + Delta-G solvation = -14082.188838 eV Core-core repulsion = 11688.049792 eV Total energy + Delta-G solvation = -2394.139046 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.45149 -36.51624 -33.60492 -33.13787 -31.34221 -28.60475 -28.06951 -27.21905 -24.35053 -22.64074 -20.11861 -19.68948 -17.30383 -17.16523 -16.35911 -14.83163 -14.12971 -13.94807 -13.36256 -13.11609 -13.03261 -12.72333 -12.44632 -12.41875 -11.93735 -11.91328 -11.42445 -10.96419 -10.87824 -10.74918 -10.33624 -10.01156 -9.73730 -9.30826 -9.01112 -8.63601 -7.02590 -5.81528 -3.10831 1.88788 2.70621 3.40730 3.46263 3.48642 3.53222 4.53127 4.69899 4.90440 5.28294 5.41758 5.55212 5.58817 5.70902 5.77876 5.82816 5.97946 6.07145 6.10400 6.19378 6.32710 6.47450 6.52968 6.73861 6.78281 7.03210 7.66416 8.37017 8.72887 9.48455 10.03461 10.39208 11.41270 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.040131 B = 0.009125 C = 0.008395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.550612 B = 3067.685771 C = 3334.386633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.036 3.964 3 N -0.380 5.380 4 O 0.087 5.913 5 C -0.049 4.049 6 C -0.067 4.067 7 C -0.179 4.179 8 C 0.245 3.755 9 H 0.054 0.946 10 C -0.159 4.159 11 N -0.722 5.722 12 C -0.240 4.240 13 H 0.073 0.927 14 C -0.012 4.012 15 N -0.932 5.932 16 Si 0.908 3.092 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.292 1.292 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.104 0.896 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.037 0.963 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.386 0.614 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.030 3.330 6.902 11.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 N -0.087 5.087 4 O 0.023 5.977 5 C -0.112 4.112 6 C -0.124 4.124 7 C -0.183 4.183 8 C 0.135 3.865 9 H 0.072 0.928 10 C -0.220 4.220 11 N -0.366 5.366 12 C -0.371 4.371 13 H 0.091 0.909 14 C -0.208 4.208 15 N -0.580 5.580 16 Si 0.739 3.261 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.219 1.219 20 H 0.091 0.909 21 H 0.089 0.911 22 H 0.123 0.877 23 H 0.103 0.897 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.223 0.777 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.811 4.463 6.853 11.309 hybrid contribution -0.561 -1.416 -0.543 1.617 sum 7.250 3.046 6.310 10.083 Atomic orbital electron populations 1.20388 0.85952 1.05293 1.02606 1.23450 0.99018 0.88308 1.01506 1.73744 0.89350 1.24179 1.21465 1.84713 1.21752 1.22615 1.68647 1.24122 0.98187 0.83738 1.05184 1.20251 0.89890 0.98423 1.03862 1.21513 0.91279 0.98656 1.06863 1.18503 0.92647 0.85292 0.90057 0.92813 1.22389 1.00164 1.02025 0.97374 1.42607 1.41280 1.07206 1.45540 1.19269 1.15419 0.85201 1.17171 0.90901 1.24749 0.99086 0.97356 0.99648 1.69669 1.26478 1.29131 1.32701 0.86108 0.77700 0.83942 0.78369 1.20500 1.21844 1.21891 0.90940 0.91073 0.87721 0.89720 0.90474 0.89180 0.94444 0.93172 0.92091 0.77737 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 10.24 36.01 0.37 -1.15 16 2 C 0.04 0.69 7.13 -82.10 -0.59 0.11 16 3 N -0.38 -7.27 12.07 33.42 0.40 -6.87 16 4 O 0.09 1.52 11.20 17.18 0.19 1.71 16 5 C -0.05 -0.79 7.49 -35.30 -0.26 -1.06 16 6 C -0.07 -0.76 10.12 36.01 0.36 -0.40 16 7 C -0.18 -3.36 5.16 -104.42 -0.54 -3.90 16 8 C 0.25 4.90 3.22 -69.09 -0.22 4.68 16 9 H 0.05 1.05 7.37 -51.92 -0.38 0.66 16 10 C -0.16 -2.88 9.38 37.15 0.35 -2.53 16 11 N -0.72 -17.82 4.85 -54.55 -0.26 -18.09 16 12 C -0.24 -6.46 9.82 -15.06 -0.15 -6.61 16 13 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 14 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 15 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 16 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 21 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 22 H 0.10 2.14 5.42 -51.93 -0.28 1.86 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.95 7.63 -51.93 -0.40 0.55 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 28 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 29 H 0.39 10.07 5.02 -40.82 -0.21 9.87 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 258.63 15.07 3.90 3.90 Total: -1.00 -30.51 258.63 -4.61 -35.12 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -3.77 Total: 5.47 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -0.77 Total: -11.30 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.86 Total: -51.83 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.19 Total: 1.71 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.51 -4.61 -35.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086110450.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.285 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds