Wall clock time and date at job start Sun Mar 29 2020 21:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30180 * 126.80260 * 2 1 4 4 O 1.20913 * 111.60140 * 180.24737 * 3 2 1 5 5 C 1.34040 * 111.57017 * 359.74675 * 4 3 2 6 6 C 1.50705 * 126.78046 * 179.97438 * 5 4 3 7 7 C 1.35450 * 106.44640 * 359.97438 * 5 4 3 8 8 C 1.50698 * 128.00987 * 179.97438 * 7 5 4 9 9 H 1.09008 * 109.46833 * 347.61567 * 8 7 5 10 10 C 1.52993 * 109.47160 * 107.61560 * 8 7 5 11 11 N 1.46502 * 109.47379 * 227.61914 * 8 7 5 12 12 C 1.36940 * 119.99995 * 161.97438 * 11 8 7 13 13 H 1.07995 * 119.99818 * 359.97438 * 12 11 8 14 14 C 1.38814 * 119.99775 * 179.97438 * 12 11 8 15 15 N 1.31619 * 119.99719 * 359.72355 * 14 12 11 16 16 Si 1.86800 * 119.99928 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47011 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.46907 * 120.00172 * 16 14 12 19 19 H 1.48499 * 109.46941 * 240.00198 * 16 14 12 20 20 H 1.08999 * 109.47319 * 275.76819 * 1 2 3 21 21 H 1.08998 * 109.46946 * 35.76343 * 1 2 3 22 22 H 1.09001 * 109.47490 * 155.76385 * 1 2 3 23 23 H 1.08997 * 109.46998 * 270.00004 * 6 5 4 24 24 H 1.09002 * 109.46464 * 29.99682 * 6 5 4 25 25 H 1.08998 * 109.47059 * 149.99528 * 6 5 4 26 26 H 1.09001 * 109.47294 * 300.00294 * 10 8 7 27 27 H 1.09000 * 109.47408 * 60.00520 * 10 8 7 28 28 H 1.09004 * 109.47269 * 180.02562 * 10 8 7 29 29 H 0.96996 * 119.99431 * 341.97505 * 11 8 7 30 30 H 0.97007 * 119.99478 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6068 -0.0033 6 6 4.9021 -1.3697 -0.0086 7 6 2.3539 -1.1320 0.0039 8 6 1.9589 -2.5863 0.0079 9 1 2.8313 -3.2003 -0.2163 10 6 1.4112 -2.9623 1.3861 11 7 0.9271 -2.8150 -1.0067 12 6 0.6726 -4.0853 -1.4502 13 1 1.2327 -4.9185 -1.0523 14 6 -0.3054 -4.3020 -2.4111 15 7 -0.9918 -3.2871 -2.8920 16 14 -0.6522 -6.0348 -3.0167 17 1 0.2453 -6.9913 -2.3204 18 1 -2.0668 -6.3850 -2.7313 19 1 -0.4103 -6.1054 -4.4801 20 1 -0.3634 0.1033 1.0224 21 1 -0.3633 0.8339 -0.6006 22 1 -0.3634 -0.9371 -0.4218 23 1 5.2102 -1.5554 -1.0375 24 1 5.6685 -0.7851 0.5004 25 1 4.7676 -2.3202 0.5077 26 1 2.1789 -2.7922 2.1410 27 1 0.5389 -2.3484 1.6103 28 1 1.1260 -4.0143 1.3891 29 1 0.4244 -2.0665 -1.3642 30 1 -1.6750 -3.4385 -3.5638 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086110450.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:25 Heat of formation + Delta-G solvation = 42.886584 kcal Electronic energy + Delta-G solvation = -14083.024632 eV Core-core repulsion = 11688.049792 eV Total energy + Delta-G solvation = -2394.974840 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.86720 -38.12430 -35.26811 -34.55854 -33.05872 -30.29385 -29.56009 -28.40046 -26.17705 -24.29484 -21.66787 -21.06464 -19.21734 -18.62315 -17.81499 -16.61500 -15.85083 -15.54991 -14.84498 -14.71642 -14.21697 -13.93563 -13.90313 -13.75663 -13.42515 -13.22314 -13.12919 -12.82177 -12.54273 -12.28653 -12.06816 -11.80914 -11.54534 -11.00530 -10.73271 -10.01885 -9.01593 -7.91936 -5.20744 0.55010 1.25167 1.50393 1.50662 1.60493 2.27044 2.58530 3.24514 3.42736 3.61588 3.88780 4.08981 4.23127 4.45145 4.55758 4.59543 4.72314 4.75041 4.77646 4.83581 4.97907 5.04935 5.22216 5.26849 5.29375 5.54026 5.56127 6.29978 7.35047 7.36898 8.09856 8.34734 9.32002 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.040131 B = 0.009125 C = 0.008395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.550612 B = 3067.685771 C = 3334.386633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.020 3.980 3 N -0.397 5.397 4 O 0.089 5.911 5 C -0.025 4.025 6 C -0.069 4.069 7 C -0.211 4.211 8 C 0.244 3.756 9 H 0.064 0.936 10 C -0.150 4.150 11 N -0.736 5.736 12 C -0.234 4.234 13 H 0.083 0.917 14 C -0.076 4.076 15 N -0.971 5.971 16 Si 0.971 3.029 17 H -0.262 1.262 18 H -0.297 1.297 19 H -0.298 1.298 20 H 0.091 0.909 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.051 0.949 29 H 0.376 0.624 30 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.858 2.663 7.841 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 N -0.105 5.105 4 O 0.026 5.974 5 C -0.090 4.090 6 C -0.126 4.126 7 C -0.215 4.215 8 C 0.136 3.864 9 H 0.082 0.918 10 C -0.210 4.210 11 N -0.379 5.379 12 C -0.365 4.365 13 H 0.101 0.899 14 C -0.268 4.268 15 N -0.622 5.622 16 Si 0.801 3.199 17 H -0.186 1.186 18 H -0.224 1.224 19 H -0.225 1.225 20 H 0.110 0.890 21 H 0.094 0.906 22 H 0.096 0.904 23 H 0.114 0.886 24 H 0.126 0.874 25 H 0.122 0.878 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.210 0.790 30 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.682 3.790 7.835 13.019 hybrid contribution -1.014 -1.155 -0.769 1.719 sum 8.668 2.634 7.066 11.489 Atomic orbital electron populations 1.20297 0.85790 1.03905 1.03662 1.23674 0.99540 0.88822 1.01804 1.73730 0.89867 1.24403 1.22494 1.84693 1.21106 1.23362 1.68214 1.24902 0.99272 0.83104 1.01680 1.20555 0.88106 0.98745 1.05183 1.21445 0.92415 0.97918 1.09756 1.18632 0.91714 0.86429 0.89624 0.91838 1.22250 1.00671 1.01075 0.97012 1.42836 1.42384 1.06175 1.46534 1.19672 1.14411 0.86428 1.16020 0.89927 1.25533 0.99752 1.00805 1.00754 1.69831 1.27493 1.31090 1.33741 0.85095 0.77278 0.80191 0.77337 1.18629 1.22407 1.22535 0.89025 0.90571 0.90444 0.88611 0.87360 0.87843 0.91346 0.94139 0.92974 0.78955 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.86 10.24 71.24 0.73 -2.13 16 2 C 0.02 0.75 7.13 43.58 0.31 1.06 16 3 N -0.40 -14.81 12.07 -49.57 -0.60 -15.41 16 4 O 0.09 2.97 11.20 71.64 0.80 3.77 16 5 C -0.03 -0.77 7.49 25.04 0.19 -0.58 16 6 C -0.07 -1.30 10.12 71.24 0.72 -0.58 16 7 C -0.21 -7.64 5.16 -19.74 -0.10 -7.74 16 8 C 0.24 9.44 3.22 44.24 0.14 9.58 16 9 H 0.06 2.32 7.37 -2.38 -0.02 2.30 16 10 C -0.15 -5.17 9.38 71.98 0.67 -4.50 16 11 N -0.74 -36.31 4.85 -326.50 -1.58 -37.89 16 12 C -0.23 -12.50 9.82 84.03 0.83 -11.67 16 13 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 14 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 15 N -0.97 -58.73 13.06 21.65 0.28 -58.45 16 16 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 19 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 20 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 21 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 22 H 0.08 3.27 5.42 -2.39 -0.01 3.26 16 23 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.11 1.42 8.14 -2.39 -0.02 1.41 16 25 H 0.10 1.74 7.63 -2.39 -0.02 1.72 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16 28 H 0.05 1.86 8.11 -2.38 -0.02 1.84 16 29 H 0.38 20.02 5.02 -92.71 -0.47 19.55 16 30 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -65.23 258.63 5.56 -59.67 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.68 Total: 21.41 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 3.96 Total: -20.38 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -1.90 Total: -111.75 kcal Atomic # 8 Polarization: 2.97 SS G_CDS: 0.80 Total: 3.77 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -65.23 5.56 -59.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086110450.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.555 kcal (2) G-P(sol) polarization free energy of solvation -65.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds