Wall clock time and date at job start Sun Mar 29 2020 21:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30177 * 126.79839 * 2 1 4 4 O 1.20921 * 111.60582 * 179.97438 * 3 2 1 5 5 C 1.34045 * 111.56422 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.77521 * 180.02562 * 5 4 3 7 7 C 1.35452 * 106.44681 * 359.74956 * 5 4 3 8 8 C 1.50694 * 128.00782 * 180.23047 * 7 5 4 9 9 H 1.09003 * 109.47186 * 194.60009 * 8 7 5 10 10 C 1.53004 * 109.46972 * 74.60364 * 8 7 5 11 11 N 1.46500 * 109.47208 * 314.60592 * 8 7 5 12 12 C 1.36940 * 119.99656 * 203.29769 * 11 8 7 13 13 H 1.08000 * 120.00206 * 0.02562 * 12 11 8 14 14 C 1.38813 * 119.99581 * 179.97438 * 12 11 8 15 15 N 1.31617 * 120.00318 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99795 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46895 * 60.00367 * 16 14 12 18 18 H 1.48496 * 109.46843 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47141 * 300.00510 * 16 14 12 20 20 H 1.09003 * 109.47633 * 90.02360 * 1 2 3 21 21 H 1.09007 * 109.47098 * 210.02441 * 1 2 3 22 22 H 1.09000 * 109.47712 * 330.02057 * 1 2 3 23 23 H 1.09003 * 109.47167 * 5.02216 * 6 5 4 24 24 H 1.08999 * 109.47015 * 125.03031 * 6 5 4 25 25 H 1.09002 * 109.46967 * 245.02076 * 6 5 4 26 26 H 1.09002 * 109.47214 * 179.97438 * 10 8 7 27 27 H 1.08997 * 109.47523 * 300.00053 * 10 8 7 28 28 H 1.09000 * 109.46983 * 60.00272 * 10 8 7 29 29 H 0.96991 * 120.00327 * 23.30258 * 11 8 7 30 30 H 0.97001 * 120.00507 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4537 0.7255 0.0005 5 6 3.6024 -0.6067 0.0004 6 6 4.9022 -1.3694 0.0014 7 6 2.3539 -1.1320 0.0054 8 6 1.9591 -2.5863 0.0121 9 1 0.9035 -2.6774 -0.2441 10 6 2.1983 -3.1732 1.4047 11 7 2.7649 -3.3156 -0.9702 12 6 2.3039 -4.4936 -1.4948 13 1 1.3461 -4.8846 -1.1847 14 6 3.0672 -5.1844 -2.4259 15 7 4.2342 -4.7076 -2.8042 16 14 2.4387 -6.7916 -3.1411 17 1 1.1505 -6.5522 -3.8399 18 1 3.4334 -7.3269 -4.1051 19 1 2.2329 -7.7736 -2.0463 20 1 -0.3634 -0.0004 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3634 0.8901 0.5135 23 1 5.7336 -0.6703 0.0923 24 1 4.9162 -2.0622 0.8428 25 1 4.9968 -1.9273 -0.9302 26 1 1.9123 -4.2250 1.4098 27 1 3.2538 -3.0820 1.6611 28 1 1.5987 -2.6305 2.1356 29 1 3.6249 -2.9643 -1.2489 30 1 4.7678 -5.1905 -3.4546 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086110451.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:27 Heat of formation + Delta-G solvation = 60.126042 kcal Electronic energy + Delta-G solvation = -14085.618949 eV Core-core repulsion = 11691.391669 eV Total energy + Delta-G solvation = -2394.227281 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.43864 -36.48441 -33.97469 -32.77813 -31.22139 -28.55954 -28.33396 -27.14232 -24.30292 -22.62370 -20.47125 -19.25038 -17.48656 -17.18627 -16.22251 -14.85188 -14.22275 -13.79694 -13.25733 -13.14642 -13.01586 -12.85564 -12.48710 -12.32574 -12.06321 -11.86125 -11.51084 -10.95372 -10.86510 -10.54692 -10.47588 -10.09036 -9.73815 -9.42131 -8.99423 -8.54475 -7.03599 -5.82151 -3.10806 1.93388 2.67179 3.41561 3.46217 3.46919 3.58218 4.55227 4.58632 4.90648 5.32547 5.47463 5.57379 5.62462 5.70840 5.75314 5.88292 5.91743 6.06670 6.09953 6.23584 6.30802 6.45068 6.53333 6.64327 6.76162 7.02889 7.65406 8.37035 8.70591 9.48433 10.03208 10.39493 11.40792 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.039780 B = 0.009152 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.703132 B = 3058.718485 C = 3327.418097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.021 3.979 3 N -0.380 5.380 4 O 0.086 5.914 5 C -0.026 4.026 6 C -0.074 4.074 7 C -0.188 4.188 8 C 0.245 3.755 9 H 0.058 0.942 10 C -0.160 4.160 11 N -0.723 5.723 12 C -0.240 4.240 13 H 0.071 0.929 14 C -0.012 4.012 15 N -0.934 5.934 16 Si 0.908 3.092 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 H 0.078 0.922 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.385 0.615 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.726 6.312 6.737 9.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.138 4.138 3 N -0.088 5.088 4 O 0.022 5.978 5 C -0.089 4.089 6 C -0.132 4.132 7 C -0.193 4.193 8 C 0.135 3.865 9 H 0.076 0.924 10 C -0.220 4.220 11 N -0.366 5.366 12 C -0.371 4.371 13 H 0.089 0.911 14 C -0.208 4.208 15 N -0.582 5.582 16 Si 0.739 3.261 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.212 1.212 20 H 0.096 0.904 21 H 0.099 0.901 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.122 0.878 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.221 0.779 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.011 7.471 6.662 10.453 hybrid contribution -0.094 -1.563 -0.582 1.670 sum -3.105 5.908 6.080 9.028 Atomic orbital electron populations 1.20113 0.86433 1.03169 1.03215 1.23387 0.98677 0.88787 1.02978 1.73735 0.89483 1.24150 1.21453 1.84713 1.21502 1.23080 1.68518 1.24254 0.98675 0.82991 1.03001 1.20458 0.89197 0.98070 1.05452 1.21521 0.91445 0.98404 1.07885 1.18468 0.95581 0.82339 0.90126 0.92447 1.22406 1.00827 1.01162 0.97599 1.42565 1.21676 1.24342 1.48036 1.19199 1.02195 0.97528 1.18206 0.91055 1.24728 0.96892 0.99261 0.99884 1.69625 1.12395 1.40184 1.35960 0.86251 0.77662 0.83483 0.78684 1.21272 1.21677 1.21227 0.90358 0.90052 0.91106 0.90772 0.89202 0.87799 0.92113 0.93299 0.94388 0.77860 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.23 36.00 0.37 -0.62 16 2 C 0.02 0.37 7.33 -82.10 -0.60 -0.24 16 3 N -0.38 -7.05 12.07 33.42 0.40 -6.65 16 4 O 0.09 1.55 11.20 17.16 0.19 1.75 16 5 C -0.03 -0.46 7.33 -35.30 -0.26 -0.72 16 6 C -0.07 -1.17 9.44 36.01 0.34 -0.83 16 7 C -0.19 -3.55 5.23 -104.43 -0.55 -4.09 16 8 C 0.25 4.93 3.23 -69.08 -0.22 4.70 16 9 H 0.06 1.16 7.62 -51.93 -0.40 0.76 16 10 C -0.16 -2.85 9.45 37.16 0.35 -2.50 16 11 N -0.72 -17.63 5.04 -54.55 -0.27 -17.90 16 12 C -0.24 -6.47 9.92 -15.06 -0.15 -6.62 16 13 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 14 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 15 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 16 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 21 H 0.08 1.01 7.86 -51.92 -0.41 0.60 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.09 1.35 7.07 -51.93 -0.37 0.98 16 25 H 0.10 1.89 6.35 -51.93 -0.33 1.56 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 0.86 7.07 -51.93 -0.37 0.49 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.39 9.67 4.76 -40.82 -0.19 9.48 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 257.48 15.07 3.88 3.88 Total: -1.00 -30.06 257.48 -4.64 -34.70 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.72 Total: 5.20 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.82 Total: -11.33 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.85 Total: -51.05 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.19 Total: 1.75 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.06 -4.64 -34.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086110451.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.824 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds