Wall clock time and date at job start Sun Mar 29 2020 21:35:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.30177 * 126.79839 * 2 1
4 4 O 1.20921 * 111.60582 * 179.97438 * 3 2 1
5 5 C 1.34045 * 111.56422 * 0.02562 * 4 3 2
6 6 C 1.50703 * 126.77521 * 180.02562 * 5 4 3
7 7 C 1.35452 * 106.44681 * 359.74956 * 5 4 3
8 8 C 1.50694 * 128.00782 * 180.23047 * 7 5 4
9 9 H 1.09003 * 109.47186 * 194.60009 * 8 7 5
10 10 C 1.53004 * 109.46972 * 74.60364 * 8 7 5
11 11 N 1.46500 * 109.47208 * 314.60592 * 8 7 5
12 12 C 1.36940 * 119.99656 * 203.29769 * 11 8 7
13 13 H 1.08000 * 120.00206 * 0.02562 * 12 11 8
14 14 C 1.38813 * 119.99581 * 179.97438 * 12 11 8
15 15 N 1.31617 * 120.00318 * 0.02562 * 14 12 11
16 16 Si 1.86807 * 119.99795 * 179.97438 * 14 12 11
17 17 H 1.48497 * 109.46895 * 60.00367 * 16 14 12
18 18 H 1.48496 * 109.46843 * 180.02562 * 16 14 12
19 19 H 1.48496 * 109.47141 * 300.00510 * 16 14 12
20 20 H 1.09003 * 109.47633 * 90.02360 * 1 2 3
21 21 H 1.09007 * 109.47098 * 210.02441 * 1 2 3
22 22 H 1.09000 * 109.47712 * 330.02057 * 1 2 3
23 23 H 1.09003 * 109.47167 * 5.02216 * 6 5 4
24 24 H 1.08999 * 109.47015 * 125.03031 * 6 5 4
25 25 H 1.09002 * 109.46967 * 245.02076 * 6 5 4
26 26 H 1.09002 * 109.47214 * 179.97438 * 10 8 7
27 27 H 1.08997 * 109.47523 * 300.00053 * 10 8 7
28 28 H 1.09000 * 109.46983 * 60.00272 * 10 8 7
29 29 H 0.96991 * 120.00327 * 23.30258 * 11 8 7
30 30 H 0.97001 * 120.00507 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2867 1.0424 0.0000
4 8 3.4537 0.7255 0.0005
5 6 3.6024 -0.6067 0.0004
6 6 4.9022 -1.3694 0.0014
7 6 2.3539 -1.1320 0.0054
8 6 1.9591 -2.5863 0.0121
9 1 0.9035 -2.6774 -0.2441
10 6 2.1983 -3.1732 1.4047
11 7 2.7649 -3.3156 -0.9702
12 6 2.3039 -4.4936 -1.4948
13 1 1.3461 -4.8846 -1.1847
14 6 3.0672 -5.1844 -2.4259
15 7 4.2342 -4.7076 -2.8042
16 14 2.4387 -6.7916 -3.1411
17 1 1.1505 -6.5522 -3.8399
18 1 3.4334 -7.3269 -4.1051
19 1 2.2329 -7.7736 -2.0463
20 1 -0.3634 -0.0004 -1.0277
21 1 -0.3634 -0.8898 0.5142
22 1 -0.3634 0.8901 0.5135
23 1 5.7336 -0.6703 0.0923
24 1 4.9162 -2.0622 0.8428
25 1 4.9968 -1.9273 -0.9302
26 1 1.9123 -4.2250 1.4098
27 1 3.2538 -3.0820 1.6611
28 1 1.5987 -2.6305 2.1356
29 1 3.6249 -2.9643 -1.2489
30 1 4.7678 -5.1905 -3.4546
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000086110451.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:35:27
Heat of formation + Delta-G solvation = 41.538897 kcal
Electronic energy + Delta-G solvation = -14086.424948 eV
Core-core repulsion = 11691.391669 eV
Total energy + Delta-G solvation = -2395.033280 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 210.111 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-45.83909 -38.09916 -35.48169 -34.42394 -32.90807 -30.31062 -29.54622 -28.50266
-26.13475 -24.26276 -21.91725 -20.70388 -19.39430 -18.59967 -17.72535 -16.69671
-15.82721 -15.51750 -14.88374 -14.47088 -14.37296 -14.14773 -13.78594 -13.72323
-13.45224 -13.19974 -13.16446 -12.74828 -12.63529 -12.24442 -12.05485 -11.84026
-11.58958 -11.00791 -10.74509 -10.01079 -9.01529 -7.91396 -5.19564 0.52050
1.26469 1.51154 1.52977 1.58799 2.19237 2.59333 3.28317 3.43858
3.59640 3.82880 4.11570 4.23434 4.41610 4.57192 4.61818 4.67860
4.73271 4.77961 4.82112 4.97432 5.06040 5.19732 5.24560 5.26477
5.54665 5.56305 6.30977 7.30550 7.38544 8.10790 8.37506 9.31878
Molecular weight = 210.11amu
Principal moments of inertia in cm(-1)
A = 0.039780 B = 0.009152 C = 0.008413
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 703.703132 B = 3058.718485 C = 3327.418097
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C 0.021 3.979
3 N -0.395 5.395
4 O 0.080 5.920
5 C -0.023 4.023
6 C -0.069 4.069
7 C -0.210 4.210
8 C 0.244 3.756
9 H 0.058 0.942
10 C -0.150 4.150
11 N -0.736 5.736
12 C -0.239 4.239
13 H 0.078 0.922
14 C -0.072 4.072
15 N -0.967 5.967
16 Si 0.970 3.030
17 H -0.281 1.281
18 H -0.298 1.298
19 H -0.277 1.277
20 H 0.084 0.916
21 H 0.095 0.905
22 H 0.089 0.911
23 H 0.105 0.895
24 H 0.097 0.903
25 H 0.078 0.922
26 H 0.051 0.949
27 H 0.048 0.952
28 H 0.064 0.936
29 H 0.379 0.621
30 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.704 6.395 7.562 10.574
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.138 4.138
3 N -0.105 5.105
4 O 0.019 5.981
5 C -0.087 4.087
6 C -0.127 4.127
7 C -0.215 4.215
8 C 0.136 3.864
9 H 0.076 0.924
10 C -0.210 4.210
11 N -0.379 5.379
12 C -0.371 4.371
13 H 0.096 0.904
14 C -0.264 4.264
15 N -0.617 5.617
16 Si 0.799 3.201
17 H -0.207 1.207
18 H -0.224 1.224
19 H -0.203 1.203
20 H 0.102 0.898
21 H 0.113 0.887
22 H 0.108 0.892
23 H 0.123 0.877
24 H 0.115 0.885
25 H 0.097 0.903
26 H 0.070 0.930
27 H 0.067 0.933
28 H 0.083 0.917
29 H 0.214 0.786
30 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -4.010 7.570 7.523 11.401
hybrid contribution 0.176 -1.514 -0.787 1.715
sum -3.834 6.056 6.736 9.836
Atomic orbital electron populations
1.20293 0.83838 1.04832 1.04080 1.23945 1.00376 0.87960 1.01498
1.73729 0.89656 1.24613 1.22486 1.84701 1.21614 1.23030 1.68729
1.24603 0.99281 0.83064 1.01720 1.20455 0.89533 0.98438 1.04254
1.21507 0.92324 0.98086 1.09574 1.18575 0.94886 0.82824 0.90164
0.92396 1.22257 1.01362 1.00700 0.96698 1.42762 1.22008 1.24190
1.48911 1.19579 1.02086 0.98100 1.17348 0.90376 1.25481 0.97396
1.02514 1.01046 1.69777 1.13624 1.41463 1.36873 0.85266 0.76889
0.80062 0.77856 1.20726 1.22448 1.20340 0.89767 0.88667 0.89208
0.87658 0.88497 0.90336 0.93025 0.93323 0.91686 0.78583 0.94051
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.83 10.23 71.23 0.73 -1.10 16
2 C 0.02 0.72 7.33 43.58 0.32 1.04 16
3 N -0.40 -14.09 12.07 -49.56 -0.60 -14.69 16
4 O 0.08 2.83 11.20 71.59 0.80 3.63 16
5 C -0.02 -0.81 7.33 25.04 0.18 -0.62 16
6 C -0.07 -2.13 9.44 71.24 0.67 -1.45 16
7 C -0.21 -7.67 5.23 -19.74 -0.10 -7.77 16
8 C 0.24 9.51 3.23 44.24 0.14 9.65 16
9 H 0.06 2.24 7.62 -2.39 -0.02 2.22 16
10 C -0.15 -5.09 9.45 71.98 0.68 -4.41 16
11 N -0.74 -35.64 5.04 -326.50 -1.65 -37.29 16
12 C -0.24 -12.77 9.92 84.03 0.83 -11.94 16
13 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16
14 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16
15 N -0.97 -57.04 13.06 21.65 0.28 -56.76 16
16 Si 0.97 44.89 29.55 68.60 2.03 46.92 16
17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16
18 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16
19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16
20 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16
21 H 0.09 2.10 7.86 -2.38 -0.02 2.08 16
22 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16
23 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16
24 H 0.10 2.81 7.07 -2.39 -0.02 2.80 16
25 H 0.08 2.88 6.35 -2.39 -0.02 2.87 16
26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
27 H 0.05 1.63 7.07 -2.39 -0.02 1.61 16
28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16
29 H 0.38 19.18 4.76 -92.71 -0.44 18.74 16
30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16
Total: -1.00 -62.75 257.48 5.50 -57.25
By element:
Atomic # 1 Polarization: 20.36 SS G_CDS: 0.70 Total: 21.06 kcal
Atomic # 6 Polarization: -24.05 SS G_CDS: 3.92 Total: -20.13 kcal
Atomic # 7 Polarization: -106.78 SS G_CDS: -1.96 Total: -108.74 kcal
Atomic # 8 Polarization: 2.83 SS G_CDS: 0.80 Total: 3.63 kcal
Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal
Total: -62.75 5.50 -57.25 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000086110451.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.792 kcal
(2) G-P(sol) polarization free energy of solvation -62.748 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.044 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.253 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.539 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds