Wall clock time and date at job start Sun Mar 29 2020 21:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30177 * 126.79839 * 2 1 4 4 O 1.20921 * 111.60582 * 179.97438 * 3 2 1 5 5 C 1.34045 * 111.56422 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.77521 * 180.02562 * 5 4 3 7 7 C 1.35452 * 106.44681 * 359.74956 * 5 4 3 8 8 C 1.50694 * 128.00782 * 180.23047 * 7 5 4 9 9 H 1.09003 * 109.47186 * 194.60009 * 8 7 5 10 10 C 1.53004 * 109.46972 * 74.60364 * 8 7 5 11 11 N 1.46500 * 109.47208 * 314.60592 * 8 7 5 12 12 C 1.36940 * 119.99656 * 203.29769 * 11 8 7 13 13 H 1.08000 * 120.00206 * 0.02562 * 12 11 8 14 14 C 1.38813 * 119.99581 * 179.97438 * 12 11 8 15 15 N 1.31617 * 120.00318 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99795 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46895 * 60.00367 * 16 14 12 18 18 H 1.48496 * 109.46843 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47141 * 300.00510 * 16 14 12 20 20 H 1.09003 * 109.47633 * 90.02360 * 1 2 3 21 21 H 1.09007 * 109.47098 * 210.02441 * 1 2 3 22 22 H 1.09000 * 109.47712 * 330.02057 * 1 2 3 23 23 H 1.09003 * 109.47167 * 5.02216 * 6 5 4 24 24 H 1.08999 * 109.47015 * 125.03031 * 6 5 4 25 25 H 1.09002 * 109.46967 * 245.02076 * 6 5 4 26 26 H 1.09002 * 109.47214 * 179.97438 * 10 8 7 27 27 H 1.08997 * 109.47523 * 300.00053 * 10 8 7 28 28 H 1.09000 * 109.46983 * 60.00272 * 10 8 7 29 29 H 0.96991 * 120.00327 * 23.30258 * 11 8 7 30 30 H 0.97001 * 120.00507 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4537 0.7255 0.0005 5 6 3.6024 -0.6067 0.0004 6 6 4.9022 -1.3694 0.0014 7 6 2.3539 -1.1320 0.0054 8 6 1.9591 -2.5863 0.0121 9 1 0.9035 -2.6774 -0.2441 10 6 2.1983 -3.1732 1.4047 11 7 2.7649 -3.3156 -0.9702 12 6 2.3039 -4.4936 -1.4948 13 1 1.3461 -4.8846 -1.1847 14 6 3.0672 -5.1844 -2.4259 15 7 4.2342 -4.7076 -2.8042 16 14 2.4387 -6.7916 -3.1411 17 1 1.1505 -6.5522 -3.8399 18 1 3.4334 -7.3269 -4.1051 19 1 2.2329 -7.7736 -2.0463 20 1 -0.3634 -0.0004 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3634 0.8901 0.5135 23 1 5.7336 -0.6703 0.0923 24 1 4.9162 -2.0622 0.8428 25 1 4.9968 -1.9273 -0.9302 26 1 1.9123 -4.2250 1.4098 27 1 3.2538 -3.0820 1.6611 28 1 1.5987 -2.6305 2.1356 29 1 3.6249 -2.9643 -1.2489 30 1 4.7678 -5.1905 -3.4546 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086110451.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:27 Heat of formation + Delta-G solvation = 41.538897 kcal Electronic energy + Delta-G solvation = -14086.424948 eV Core-core repulsion = 11691.391669 eV Total energy + Delta-G solvation = -2395.033280 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.83909 -38.09916 -35.48169 -34.42394 -32.90807 -30.31062 -29.54622 -28.50266 -26.13475 -24.26276 -21.91725 -20.70388 -19.39430 -18.59967 -17.72535 -16.69671 -15.82721 -15.51750 -14.88374 -14.47088 -14.37296 -14.14773 -13.78594 -13.72323 -13.45224 -13.19974 -13.16446 -12.74828 -12.63529 -12.24442 -12.05485 -11.84026 -11.58958 -11.00791 -10.74509 -10.01079 -9.01529 -7.91396 -5.19564 0.52050 1.26469 1.51154 1.52977 1.58799 2.19237 2.59333 3.28317 3.43858 3.59640 3.82880 4.11570 4.23434 4.41610 4.57192 4.61818 4.67860 4.73271 4.77961 4.82112 4.97432 5.06040 5.19732 5.24560 5.26477 5.54665 5.56305 6.30977 7.30550 7.38544 8.10790 8.37506 9.31878 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.039780 B = 0.009152 C = 0.008413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.703132 B = 3058.718485 C = 3327.418097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.021 3.979 3 N -0.395 5.395 4 O 0.080 5.920 5 C -0.023 4.023 6 C -0.069 4.069 7 C -0.210 4.210 8 C 0.244 3.756 9 H 0.058 0.942 10 C -0.150 4.150 11 N -0.736 5.736 12 C -0.239 4.239 13 H 0.078 0.922 14 C -0.072 4.072 15 N -0.967 5.967 16 Si 0.970 3.030 17 H -0.281 1.281 18 H -0.298 1.298 19 H -0.277 1.277 20 H 0.084 0.916 21 H 0.095 0.905 22 H 0.089 0.911 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.379 0.621 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 6.395 7.562 10.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.138 4.138 3 N -0.105 5.105 4 O 0.019 5.981 5 C -0.087 4.087 6 C -0.127 4.127 7 C -0.215 4.215 8 C 0.136 3.864 9 H 0.076 0.924 10 C -0.210 4.210 11 N -0.379 5.379 12 C -0.371 4.371 13 H 0.096 0.904 14 C -0.264 4.264 15 N -0.617 5.617 16 Si 0.799 3.201 17 H -0.207 1.207 18 H -0.224 1.224 19 H -0.203 1.203 20 H 0.102 0.898 21 H 0.113 0.887 22 H 0.108 0.892 23 H 0.123 0.877 24 H 0.115 0.885 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.214 0.786 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.010 7.570 7.523 11.401 hybrid contribution 0.176 -1.514 -0.787 1.715 sum -3.834 6.056 6.736 9.836 Atomic orbital electron populations 1.20293 0.83838 1.04832 1.04080 1.23945 1.00376 0.87960 1.01498 1.73729 0.89656 1.24613 1.22486 1.84701 1.21614 1.23030 1.68729 1.24603 0.99281 0.83064 1.01720 1.20455 0.89533 0.98438 1.04254 1.21507 0.92324 0.98086 1.09574 1.18575 0.94886 0.82824 0.90164 0.92396 1.22257 1.01362 1.00700 0.96698 1.42762 1.22008 1.24190 1.48911 1.19579 1.02086 0.98100 1.17348 0.90376 1.25481 0.97396 1.02514 1.01046 1.69777 1.13624 1.41463 1.36873 0.85266 0.76889 0.80062 0.77856 1.20726 1.22448 1.20340 0.89767 0.88667 0.89208 0.87658 0.88497 0.90336 0.93025 0.93323 0.91686 0.78583 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.83 10.23 71.23 0.73 -1.10 16 2 C 0.02 0.72 7.33 43.58 0.32 1.04 16 3 N -0.40 -14.09 12.07 -49.56 -0.60 -14.69 16 4 O 0.08 2.83 11.20 71.59 0.80 3.63 16 5 C -0.02 -0.81 7.33 25.04 0.18 -0.62 16 6 C -0.07 -2.13 9.44 71.24 0.67 -1.45 16 7 C -0.21 -7.67 5.23 -19.74 -0.10 -7.77 16 8 C 0.24 9.51 3.23 44.24 0.14 9.65 16 9 H 0.06 2.24 7.62 -2.39 -0.02 2.22 16 10 C -0.15 -5.09 9.45 71.98 0.68 -4.41 16 11 N -0.74 -35.64 5.04 -326.50 -1.65 -37.29 16 12 C -0.24 -12.77 9.92 84.03 0.83 -11.94 16 13 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 14 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 15 N -0.97 -57.04 13.06 21.65 0.28 -56.76 16 16 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.09 2.10 7.86 -2.38 -0.02 2.08 16 22 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 23 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.10 2.81 7.07 -2.39 -0.02 2.80 16 25 H 0.08 2.88 6.35 -2.39 -0.02 2.87 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.63 7.07 -2.39 -0.02 1.61 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.38 19.18 4.76 -92.71 -0.44 18.74 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -62.75 257.48 5.50 -57.25 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.70 Total: 21.06 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 3.92 Total: -20.13 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -1.96 Total: -108.74 kcal Atomic # 8 Polarization: 2.83 SS G_CDS: 0.80 Total: 3.63 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -62.75 5.50 -57.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086110451.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.792 kcal (2) G-P(sol) polarization free energy of solvation -62.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds