Wall clock time and date at job start Sun Mar 29 2020 21:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47078 * 2 1 4 4 H 1.08997 * 109.47058 * 185.15565 * 3 2 1 5 5 C 1.50699 * 109.47528 * 305.16133 * 3 2 1 6 6 H 1.08005 * 120.00108 * 119.99436 * 5 3 2 7 7 C 1.37879 * 120.00040 * 300.00123 * 5 3 2 8 8 N 1.31517 * 119.99797 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00145 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46838 * 89.99952 * 9 7 5 11 11 H 1.48496 * 109.47336 * 209.99933 * 9 7 5 12 12 H 1.48502 * 109.47275 * 330.00244 * 9 7 5 13 13 N 1.46911 * 109.47065 * 65.16172 * 3 2 1 14 14 C 1.46899 * 110.99594 * 85.89565 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.83134 * 14 13 3 16 16 C 1.41384 * 126.80164 * 94.71425 * 15 14 13 17 17 C 1.35450 * 103.98650 * 179.88608 * 16 15 14 18 18 O 1.34046 * 106.44520 * 0.36985 * 17 16 15 19 19 N 1.20915 * 111.56708 * 359.74665 * 18 17 16 20 20 H 1.08995 * 109.47179 * 174.84596 * 1 2 3 21 21 H 1.09004 * 109.47107 * 54.84654 * 1 2 3 22 22 H 1.09005 * 109.47108 * 294.84959 * 1 2 3 23 23 H 1.08993 * 109.47194 * 120.00032 * 2 1 3 24 24 H 1.08995 * 109.46889 * 240.00314 * 2 1 3 25 25 H 0.96998 * 119.99897 * 180.02562 * 8 7 5 26 26 H 1.00900 * 110.99866 * 321.94680 * 13 3 2 27 27 H 1.08995 * 109.47219 * 294.82965 * 14 13 3 28 28 H 1.08999 * 109.47280 * 54.83642 * 14 13 3 29 29 H 1.08003 * 128.00300 * 0.02562 * 16 15 14 30 30 H 1.07993 * 126.77473 * 180.09421 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0923 5 6 1.4361 2.1890 -1.1615 6 1 0.8269 3.0629 -0.9838 7 6 1.6611 1.7561 -2.4511 8 7 2.4033 0.6922 -2.6675 9 14 0.9120 2.6809 -3.8908 10 1 1.8533 3.7358 -4.3452 11 1 0.6529 1.7350 -5.0059 12 1 -0.3657 3.3072 -3.4660 13 7 1.6547 2.0981 1.2570 14 6 2.6432 1.8366 2.3116 15 6 2.2830 2.6251 3.5444 16 6 1.5310 2.1693 4.6515 17 6 1.4896 3.2388 5.4817 18 8 2.1660 4.2209 4.8694 19 7 2.5977 3.8624 3.7983 20 1 -0.3633 -1.0235 -0.0923 21 1 -0.3633 0.5917 -0.8403 22 1 -0.3633 0.4319 0.9326 23 1 1.8933 -0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 2.5619 0.3879 -3.5748 26 1 0.7320 1.8104 1.5468 27 1 2.6482 0.7729 2.5492 28 1 3.6323 2.1361 1.9650 29 1 1.0930 1.1935 4.8016 30 1 1.0035 3.2913 6.4446 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088053572.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:23 Heat of formation + Delta-G solvation = 57.820672 kcal Electronic energy + Delta-G solvation = -13738.781023 eV Core-core repulsion = 11344.453774 eV Total energy + Delta-G solvation = -2394.327249 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.67266 -36.78478 -34.26127 -32.17749 -31.41987 -30.34295 -26.95269 -24.82197 -23.23420 -22.82453 -20.76404 -19.35250 -17.58650 -17.27264 -16.17299 -15.11057 -14.78919 -14.26317 -13.58843 -13.37305 -12.95275 -12.68340 -12.45286 -11.86989 -11.67451 -10.97847 -10.90434 -10.74304 -10.52923 -10.07413 -9.99590 -9.70149 -9.58921 -9.40781 -9.01652 -8.34384 -7.28501 -5.97824 -3.99131 1.72453 2.50763 3.33976 3.40257 3.44458 3.47877 4.44145 4.51977 4.78861 5.32968 5.34024 5.47072 5.52181 5.75833 6.01540 6.11671 6.29408 6.33239 6.35505 6.54398 6.85742 7.22896 7.23741 7.49650 7.66879 7.87985 8.24734 8.48626 8.56782 8.59694 9.06333 9.64380 11.09376 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.046517 B = 0.007408 C = 0.006905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.781414 B = 3778.679093 C = 4053.986439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.035 0.965 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.132 3.868 15 C 0.032 3.968 16 C -0.232 4.232 17 C -0.074 4.074 18 O 0.094 5.906 19 N -0.350 5.350 20 H 0.024 0.976 21 H 0.070 0.930 22 H 0.026 0.974 23 H 0.011 0.989 24 H 0.094 0.906 25 H 0.259 0.741 26 H 0.329 0.671 27 H 0.042 0.958 28 H 0.082 0.918 29 H 0.167 0.833 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.489 -0.093 13.098 13.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.309 5.309 14 C 0.002 3.998 15 C -0.128 4.128 16 C -0.254 4.254 17 C -0.155 4.155 18 O 0.027 5.973 19 N -0.054 5.054 20 H 0.043 0.957 21 H 0.089 0.911 22 H 0.045 0.955 23 H 0.030 0.970 24 H 0.113 0.887 25 H 0.069 0.931 26 H 0.147 0.853 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.184 0.816 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.444 1.351 12.092 12.252 hybrid contribution -1.069 -1.378 -0.256 1.762 sum -2.513 -0.027 11.836 12.100 Atomic orbital electron populations 1.21604 0.97625 0.98738 1.00819 1.22119 0.95099 1.00966 1.00372 1.19260 0.96155 0.88636 0.85083 0.94754 1.21055 1.30589 1.11496 0.89600 0.91987 1.24907 0.95551 0.95162 0.98721 1.69878 1.39039 1.23994 1.20734 0.86548 0.79629 0.79528 0.82021 1.20765 1.21418 1.19942 1.60790 1.03492 1.63507 1.03107 1.20217 0.98318 0.94366 0.86916 1.23856 0.99021 0.91318 0.98576 1.22779 1.05555 1.01990 0.95061 1.25915 1.00394 0.88158 1.01078 1.84858 1.51660 1.37083 1.23653 1.73876 1.18224 1.15073 0.98217 0.95682 0.91149 0.95450 0.97026 0.88729 0.93083 0.85338 0.94003 0.89931 0.81553 0.77206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.40 37.16 0.35 -2.40 16 2 C -0.15 -3.37 5.51 -26.73 -0.15 -3.51 16 3 C 0.22 5.36 2.33 -68.86 -0.16 5.20 16 4 H 0.03 0.94 7.70 -51.93 -0.40 0.54 16 5 C -0.49 -13.39 7.25 -34.44 -0.25 -13.64 16 6 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 7 C 0.06 1.57 5.28 -17.82 -0.09 1.48 16 8 N -0.90 -25.32 11.38 55.43 0.63 -24.69 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -14.72 6.19 -109.21 -0.68 -15.40 16 14 C 0.13 2.48 6.10 -4.97 -0.03 2.45 16 15 C 0.03 0.55 6.89 -82.09 -0.57 -0.02 16 16 C -0.23 -3.01 11.12 -39.38 -0.44 -3.45 16 17 C -0.07 -0.81 12.30 29.74 0.37 -0.44 16 18 O 0.09 1.39 11.20 17.16 0.19 1.58 16 19 N -0.35 -6.30 12.07 33.43 0.40 -5.90 16 20 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.07 1.64 6.85 -51.93 -0.36 1.28 16 22 H 0.03 0.51 6.63 -51.93 -0.34 0.17 16 23 H 0.01 0.24 7.50 -51.93 -0.39 -0.15 16 24 H 0.09 2.45 6.23 -51.93 -0.32 2.13 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.33 6.78 6.69 -39.29 -0.26 6.52 16 27 H 0.04 0.72 7.53 -51.93 -0.39 0.33 16 28 H 0.08 1.63 7.93 -51.93 -0.41 1.22 16 29 H 0.17 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.21 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 255.33 15.07 3.85 3.85 Total: -1.00 -29.91 255.33 -5.29 -35.20 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.69 Total: 3.16 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.97 Total: -14.34 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.36 Total: -45.99 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.19 Total: 1.58 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.91 -5.29 -35.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088053572.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.021 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds