Wall clock time and date at job start Sun Mar 29 2020 21:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47078 * 2 1 4 4 H 1.08997 * 109.47058 * 185.15565 * 3 2 1 5 5 C 1.50699 * 109.47528 * 305.16133 * 3 2 1 6 6 H 1.08005 * 120.00108 * 119.99436 * 5 3 2 7 7 C 1.37879 * 120.00040 * 300.00123 * 5 3 2 8 8 N 1.31517 * 119.99797 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00145 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46838 * 89.99952 * 9 7 5 11 11 H 1.48496 * 109.47336 * 209.99933 * 9 7 5 12 12 H 1.48502 * 109.47275 * 330.00244 * 9 7 5 13 13 N 1.46911 * 109.47065 * 65.16172 * 3 2 1 14 14 C 1.46899 * 110.99594 * 85.89565 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.83134 * 14 13 3 16 16 C 1.41384 * 126.80164 * 94.71425 * 15 14 13 17 17 C 1.35450 * 103.98650 * 179.88608 * 16 15 14 18 18 O 1.34046 * 106.44520 * 0.36985 * 17 16 15 19 19 N 1.20915 * 111.56708 * 359.74665 * 18 17 16 20 20 H 1.08995 * 109.47179 * 174.84596 * 1 2 3 21 21 H 1.09004 * 109.47107 * 54.84654 * 1 2 3 22 22 H 1.09005 * 109.47108 * 294.84959 * 1 2 3 23 23 H 1.08993 * 109.47194 * 120.00032 * 2 1 3 24 24 H 1.08995 * 109.46889 * 240.00314 * 2 1 3 25 25 H 0.96998 * 119.99897 * 180.02562 * 8 7 5 26 26 H 1.00900 * 110.99866 * 321.94680 * 13 3 2 27 27 H 1.08995 * 109.47219 * 294.82965 * 14 13 3 28 28 H 1.08999 * 109.47280 * 54.83642 * 14 13 3 29 29 H 1.08003 * 128.00300 * 0.02562 * 16 15 14 30 30 H 1.07993 * 126.77473 * 180.09421 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0923 5 6 1.4361 2.1890 -1.1615 6 1 0.8269 3.0629 -0.9838 7 6 1.6611 1.7561 -2.4511 8 7 2.4033 0.6922 -2.6675 9 14 0.9120 2.6809 -3.8908 10 1 1.8533 3.7358 -4.3452 11 1 0.6529 1.7350 -5.0059 12 1 -0.3657 3.3072 -3.4660 13 7 1.6547 2.0981 1.2570 14 6 2.6432 1.8366 2.3116 15 6 2.2830 2.6251 3.5444 16 6 1.5310 2.1693 4.6515 17 6 1.4896 3.2388 5.4817 18 8 2.1660 4.2209 4.8694 19 7 2.5977 3.8624 3.7983 20 1 -0.3633 -1.0235 -0.0923 21 1 -0.3633 0.5917 -0.8403 22 1 -0.3633 0.4319 0.9326 23 1 1.8933 -0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 2.5619 0.3879 -3.5748 26 1 0.7320 1.8104 1.5468 27 1 2.6482 0.7729 2.5492 28 1 3.6323 2.1361 1.9650 29 1 1.0930 1.1935 4.8016 30 1 1.0035 3.2913 6.4446 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088053572.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:23 Heat of formation + Delta-G solvation = 37.101362 kcal Electronic energy + Delta-G solvation = -13739.679480 eV Core-core repulsion = 11344.453774 eV Total energy + Delta-G solvation = -2395.225706 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.83286 -38.54813 -35.70801 -33.97434 -32.62237 -31.99655 -28.78101 -26.57421 -25.07845 -23.93854 -21.95642 -21.24941 -18.77851 -18.46614 -18.07040 -16.83489 -16.59253 -15.68667 -15.21552 -14.88214 -14.36523 -14.29658 -14.02049 -13.69942 -13.19686 -12.83063 -12.61801 -12.45854 -12.20969 -11.94346 -11.68313 -11.43973 -11.10910 -10.94578 -10.48383 -10.45361 -9.02550 -8.08150 -6.16548 0.74596 1.34799 1.41260 1.43045 1.52767 2.44219 2.59899 3.20583 3.29582 3.62003 3.96015 4.31778 4.41450 4.52981 4.54345 4.60829 4.72277 4.77816 4.92029 5.09613 5.21718 5.32102 5.40750 5.70227 5.73736 5.79971 6.28376 6.61327 6.76616 6.94318 7.50901 7.51120 8.97311 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.046517 B = 0.007408 C = 0.006905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.781414 B = 3778.679093 C = 4053.986439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.138 4.138 3 C 0.222 3.778 4 H -0.002 1.002 5 C -0.504 4.504 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.282 1.282 11 H -0.281 1.281 12 H -0.270 1.270 13 N -0.685 5.685 14 C 0.137 3.863 15 C 0.004 3.996 16 C -0.239 4.239 17 C -0.045 4.045 18 O 0.093 5.907 19 N -0.394 5.394 20 H 0.045 0.955 21 H 0.043 0.957 22 H 0.049 0.951 23 H 0.032 0.968 24 H 0.063 0.937 25 H 0.260 0.740 26 H 0.336 0.664 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.194 0.806 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 -0.264 14.882 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 C 0.114 3.886 4 H 0.016 0.984 5 C -0.543 4.543 6 H 0.066 0.934 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.208 1.208 11 H -0.207 1.207 12 H -0.195 1.195 13 N -0.318 5.318 14 C 0.007 3.993 15 C -0.154 4.154 16 C -0.261 4.261 17 C -0.126 4.126 18 O 0.026 5.974 19 N -0.098 5.098 20 H 0.064 0.936 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.155 0.845 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.211 0.789 30 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -2.941 1.178 13.881 14.238 hybrid contribution -0.589 -1.302 -0.688 1.586 sum -3.531 -0.124 13.193 13.658 Atomic orbital electron populations 1.21487 0.95793 0.99781 1.00855 1.21948 0.96650 0.99368 0.99815 1.18998 0.93712 0.89851 0.86047 0.98445 1.21259 1.30629 1.11376 0.91003 0.93367 1.25572 0.95909 0.95885 1.00929 1.69998 1.39791 1.24960 1.21166 0.85656 0.78897 0.78413 0.79266 1.20786 1.20665 1.19477 1.60609 1.04535 1.63560 1.03063 1.20071 0.96395 0.95776 0.87022 1.23792 1.00931 0.91557 0.99159 1.23090 1.05344 1.03852 0.93785 1.26925 0.97747 0.86058 1.01888 1.84797 1.51740 1.38028 1.22878 1.73877 1.19998 1.15958 0.99998 0.93564 0.93793 0.93184 0.94944 0.91809 0.93057 0.84479 0.92240 0.92283 0.78870 0.71591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.40 71.98 0.68 -4.28 16 2 C -0.14 -6.35 5.51 30.60 0.17 -6.18 16 3 C 0.22 11.26 2.33 44.17 0.10 11.37 16 4 H 0.00 -0.14 7.70 -2.39 -0.02 -0.16 16 5 C -0.50 -28.17 7.25 25.60 0.19 -27.98 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.02 0.86 5.28 84.65 0.45 1.31 16 8 N -0.92 -52.82 11.38 21.45 0.24 -52.57 16 9 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 N -0.68 -29.97 6.19 -499.44 -3.09 -33.07 16 14 C 0.14 5.18 6.10 85.56 0.52 5.70 16 15 C 0.00 0.13 6.89 43.58 0.30 0.43 16 16 C -0.24 -5.44 11.12 22.40 0.25 -5.19 16 17 C -0.05 -0.81 12.30 67.18 0.83 0.02 16 18 O 0.09 2.54 11.20 71.58 0.80 3.35 16 19 N -0.39 -14.00 12.07 -49.54 -0.60 -14.60 16 20 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.04 2.01 6.85 -2.38 -0.02 2.00 16 22 H 0.05 1.78 6.63 -2.38 -0.02 1.76 16 23 H 0.03 1.32 7.50 -2.39 -0.02 1.30 16 24 H 0.06 3.35 6.23 -2.39 -0.01 3.33 16 25 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 26 H 0.34 13.57 6.69 -89.69 -0.60 12.97 16 27 H 0.06 2.00 7.53 -2.39 -0.02 1.98 16 28 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 29 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.27 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -66.63 255.33 3.40 -63.23 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.54 Total: 11.89 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 3.48 Total: -24.82 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -3.45 Total: -100.24 kcal Atomic # 8 Polarization: 2.54 SS G_CDS: 0.80 Total: 3.35 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -66.63 3.40 -63.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088053572.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.331 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds