Wall clock time and date at job start Sun Mar 29 2020 21:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47227 * 2 1 4 4 H 1.08994 * 109.47692 * 305.65346 * 3 2 1 5 5 C 1.50701 * 109.46938 * 185.64948 * 3 2 1 6 6 H 1.08002 * 120.00501 * 245.39311 * 5 3 2 7 7 C 1.37886 * 119.99993 * 65.40041 * 5 3 2 8 8 N 1.31505 * 120.00035 * 197.19879 * 7 5 3 9 9 Si 1.86798 * 119.99841 * 17.19387 * 7 5 3 10 10 H 1.48501 * 109.46994 * 86.80841 * 9 7 5 11 11 H 1.48496 * 109.47319 * 206.80679 * 9 7 5 12 12 H 1.48499 * 109.47318 * 326.81118 * 9 7 5 13 13 N 1.46901 * 109.46955 * 65.65559 * 3 2 1 14 14 C 1.46899 * 110.99924 * 251.31040 * 13 3 2 15 15 C 1.50701 * 109.47451 * 183.08070 * 14 13 3 16 16 C 1.41376 * 126.79972 * 94.99812 * 15 14 13 17 17 C 1.35441 * 103.98757 * 180.02562 * 16 15 14 18 18 O 1.34044 * 106.44508 * 0.02562 * 17 16 15 19 19 N 1.20923 * 111.56609 * 359.70714 * 18 17 16 20 20 H 1.08997 * 109.46667 * 65.50200 * 1 2 3 21 21 H 1.08994 * 109.46408 * 305.50595 * 1 2 3 22 22 H 1.08992 * 109.46907 * 185.50393 * 1 2 3 23 23 H 1.08999 * 109.47021 * 120.00918 * 2 1 3 24 24 H 1.09007 * 109.47282 * 240.00013 * 2 1 3 25 25 H 0.97003 * 120.00266 * 179.97438 * 8 7 5 26 26 H 1.00902 * 111.00201 * 127.35881 * 13 3 2 27 27 H 1.08993 * 109.47251 * 303.08678 * 14 13 3 28 28 H 1.09002 * 109.46787 * 63.08184 * 14 13 3 29 29 H 1.08003 * 128.00323 * 0.04285 * 16 15 14 30 30 H 1.08006 * 126.77879 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9848 -0.8350 5 6 3.5406 1.4447 -0.1399 6 1 4.1579 1.8068 0.6690 7 6 4.1255 0.9845 -1.3006 8 7 5.4013 0.6659 -1.3125 9 14 3.1055 0.8135 -2.8562 10 1 3.0967 2.1063 -3.5869 11 1 3.6947 -0.2399 -3.7212 12 1 1.7142 0.4384 -2.4972 13 7 1.6650 2.0944 1.2619 14 6 0.6098 3.0931 1.0451 15 6 0.3052 3.7924 2.3448 16 6 0.8492 5.0171 2.7953 17 6 0.2655 5.2103 4.0021 18 8 -0.5453 4.1622 4.2037 19 7 -0.5141 3.3906 3.2731 20 1 -0.3632 0.4261 -0.9352 21 1 -0.3632 0.5968 0.8366 22 1 -0.3633 -1.0229 0.0986 23 1 1.8934 -0.5140 0.8899 24 1 1.8934 -0.5139 -0.8900 25 1 5.8127 0.3419 -2.1290 26 1 2.4695 2.5094 1.7076 27 1 0.9464 3.8236 0.3096 28 1 -0.2897 2.5977 0.6796 29 1 1.5644 5.6518 2.2931 30 1 0.4231 6.0439 4.6706 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088053575.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:24 Heat of formation + Delta-G solvation = 59.615207 kcal Electronic energy + Delta-G solvation = -13758.218765 eV Core-core repulsion = 11363.969333 eV Total energy + Delta-G solvation = -2394.249432 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.73363 -36.81143 -34.24930 -32.23916 -31.57400 -30.95891 -27.80963 -24.91544 -22.90086 -22.41489 -20.80914 -19.64439 -17.70888 -17.33594 -16.87335 -15.46598 -14.69764 -14.08750 -13.92354 -13.35507 -13.17898 -12.85604 -12.29905 -12.23015 -11.65644 -11.56044 -11.09384 -10.82071 -10.73840 -10.33262 -9.98124 -9.81595 -9.52439 -9.39767 -9.22000 -8.45485 -7.52004 -6.18701 -4.13845 1.67058 2.43543 3.24495 3.34219 3.37580 3.42500 4.36602 4.42735 4.72303 5.11333 5.28127 5.34749 5.48733 5.67557 5.93986 6.04659 6.10827 6.13272 6.22249 6.32385 6.63753 6.80804 7.04561 7.07619 7.42712 7.60056 7.90270 8.27086 8.48857 8.53597 8.89580 9.47498 10.94002 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.044736 B = 0.008039 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.738231 B = 3482.252651 C = 3784.303407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C 0.193 3.807 4 H 0.010 0.990 5 C -0.541 4.541 6 H 0.075 0.925 7 C 0.080 3.920 8 N -0.887 5.887 9 Si 0.863 3.137 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.252 1.252 13 N -0.673 5.673 14 C 0.132 3.868 15 C 0.028 3.972 16 C -0.229 4.229 17 C -0.072 4.072 18 O 0.094 5.906 19 N -0.352 5.352 20 H 0.035 0.965 21 H 0.057 0.943 22 H 0.035 0.965 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.265 0.735 26 H 0.341 0.659 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.169 0.831 30 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.560 8.121 5.854 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C 0.084 3.916 4 H 0.027 0.973 5 C -0.579 4.579 6 H 0.093 0.907 7 C -0.123 4.123 8 N -0.523 5.523 9 Si 0.689 3.311 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.176 1.176 13 N -0.306 5.306 14 C 0.002 3.998 15 C -0.131 4.131 16 C -0.251 4.251 17 C -0.153 4.153 18 O 0.027 5.973 19 N -0.056 5.056 20 H 0.054 0.946 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.160 0.840 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.187 0.813 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -10.642 6.471 6.052 13.848 hybrid contribution 0.858 1.312 -1.629 2.261 sum -9.784 7.783 4.423 13.262 Atomic orbital electron populations 1.21863 0.98541 0.99885 1.00478 1.21826 0.92787 0.99098 1.00846 1.19471 0.95369 0.91005 0.85764 0.97277 1.21282 0.89433 1.44434 1.02704 0.90674 1.24894 0.94770 0.93756 0.98917 1.69995 1.12123 1.42174 1.28021 0.87187 0.82196 0.78026 0.83641 1.20572 1.21302 1.17558 1.60636 1.12993 1.30027 1.26916 1.20376 0.97848 0.93382 0.88204 1.23803 0.96088 0.94534 0.98709 1.22819 1.05656 0.99289 0.97298 1.25929 0.95697 0.94525 0.99169 1.84844 1.51110 1.25400 1.35931 1.73853 1.20633 1.13737 0.97400 0.94550 0.92379 0.94540 0.92336 0.93075 0.92553 0.84027 0.93454 0.90007 0.81314 0.77092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.49 37.16 0.35 -2.55 16 2 C -0.11 -2.41 4.95 -26.73 -0.13 -2.54 16 3 C 0.19 4.50 1.74 -68.86 -0.12 4.38 16 4 H 0.01 0.22 6.16 -51.93 -0.32 -0.10 16 5 C -0.54 -14.80 9.00 -34.44 -0.31 -15.11 16 6 H 0.08 2.22 7.62 -52.49 -0.40 1.82 16 7 C 0.08 2.27 5.30 -17.82 -0.09 2.17 16 8 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 9 Si 0.86 20.89 25.86 -169.99 -4.40 16.49 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.25 -5.79 5.65 56.52 0.32 -5.47 16 13 N -0.67 -13.96 5.97 -109.22 -0.65 -14.61 16 14 C 0.13 2.34 5.68 -4.98 -0.03 2.32 16 15 C 0.03 0.46 6.81 -82.10 -0.56 -0.10 16 16 C -0.23 -2.93 11.12 -39.39 -0.44 -3.37 16 17 C -0.07 -0.76 12.30 29.73 0.37 -0.40 16 18 O 0.09 1.31 11.20 17.17 0.19 1.50 16 19 N -0.35 -5.94 12.07 33.42 0.40 -5.53 16 20 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 1.11 6.28 -51.93 -0.33 0.79 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 24 H 0.05 1.20 5.17 -51.93 -0.27 0.93 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.34 7.20 7.79 -39.29 -0.31 6.89 16 27 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 28 H 0.08 1.46 6.64 -51.93 -0.34 1.11 16 29 H 0.17 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.21 1.18 8.06 -52.48 -0.42 0.75 16 LS Contribution 251.88 15.07 3.80 3.80 Total: -1.00 -30.63 251.88 -4.56 -35.20 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.72 Total: 4.12 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -0.96 Total: -15.20 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.52 Total: -45.91 kcal Atomic # 8 Polarization: 1.31 SS G_CDS: 0.19 Total: 1.50 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.40 Total: 16.49 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.63 -4.56 -35.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088053575.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.810 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds