Wall clock time and date at job start Sun Mar 29 2020 21:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47227 * 2 1 4 4 H 1.08994 * 109.47692 * 305.65346 * 3 2 1 5 5 C 1.50701 * 109.46938 * 185.64948 * 3 2 1 6 6 H 1.08002 * 120.00501 * 245.39311 * 5 3 2 7 7 C 1.37886 * 119.99993 * 65.40041 * 5 3 2 8 8 N 1.31505 * 120.00035 * 197.19879 * 7 5 3 9 9 Si 1.86798 * 119.99841 * 17.19387 * 7 5 3 10 10 H 1.48501 * 109.46994 * 86.80841 * 9 7 5 11 11 H 1.48496 * 109.47319 * 206.80679 * 9 7 5 12 12 H 1.48499 * 109.47318 * 326.81118 * 9 7 5 13 13 N 1.46901 * 109.46955 * 65.65559 * 3 2 1 14 14 C 1.46899 * 110.99924 * 251.31040 * 13 3 2 15 15 C 1.50701 * 109.47451 * 183.08070 * 14 13 3 16 16 C 1.41376 * 126.79972 * 94.99812 * 15 14 13 17 17 C 1.35441 * 103.98757 * 180.02562 * 16 15 14 18 18 O 1.34044 * 106.44508 * 0.02562 * 17 16 15 19 19 N 1.20923 * 111.56609 * 359.70714 * 18 17 16 20 20 H 1.08997 * 109.46667 * 65.50200 * 1 2 3 21 21 H 1.08994 * 109.46408 * 305.50595 * 1 2 3 22 22 H 1.08992 * 109.46907 * 185.50393 * 1 2 3 23 23 H 1.08999 * 109.47021 * 120.00918 * 2 1 3 24 24 H 1.09007 * 109.47282 * 240.00013 * 2 1 3 25 25 H 0.97003 * 120.00266 * 179.97438 * 8 7 5 26 26 H 1.00902 * 111.00201 * 127.35881 * 13 3 2 27 27 H 1.08993 * 109.47251 * 303.08678 * 14 13 3 28 28 H 1.09002 * 109.46787 * 63.08184 * 14 13 3 29 29 H 1.08003 * 128.00323 * 0.04285 * 16 15 14 30 30 H 1.08006 * 126.77879 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9848 -0.8350 5 6 3.5406 1.4447 -0.1399 6 1 4.1579 1.8068 0.6690 7 6 4.1255 0.9845 -1.3006 8 7 5.4013 0.6659 -1.3125 9 14 3.1055 0.8135 -2.8562 10 1 3.0967 2.1063 -3.5869 11 1 3.6947 -0.2399 -3.7212 12 1 1.7142 0.4384 -2.4972 13 7 1.6650 2.0944 1.2619 14 6 0.6098 3.0931 1.0451 15 6 0.3052 3.7924 2.3448 16 6 0.8492 5.0171 2.7953 17 6 0.2655 5.2103 4.0021 18 8 -0.5453 4.1622 4.2037 19 7 -0.5141 3.3906 3.2731 20 1 -0.3632 0.4261 -0.9352 21 1 -0.3632 0.5968 0.8366 22 1 -0.3633 -1.0229 0.0986 23 1 1.8934 -0.5140 0.8899 24 1 1.8934 -0.5139 -0.8900 25 1 5.8127 0.3419 -2.1290 26 1 2.4695 2.5094 1.7076 27 1 0.9464 3.8236 0.3096 28 1 -0.2897 2.5977 0.6796 29 1 1.5644 5.6518 2.2931 30 1 0.4231 6.0439 4.6706 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088053575.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:24 Heat of formation + Delta-G solvation = 37.249662 kcal Electronic energy + Delta-G solvation = -13759.188608 eV Core-core repulsion = 11363.969333 eV Total energy + Delta-G solvation = -2395.219275 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.83836 -38.48849 -35.63511 -34.20028 -32.82732 -32.34721 -29.58488 -26.55095 -24.26956 -23.91120 -21.96919 -21.44514 -19.22796 -18.48800 -18.43141 -17.21737 -16.05538 -15.86154 -15.42719 -14.83960 -14.78698 -14.24985 -13.87007 -13.79420 -13.38299 -13.09755 -12.75183 -12.62015 -12.22510 -12.00616 -11.69396 -11.36171 -11.18248 -11.03810 -10.59094 -10.49064 -9.18917 -8.35744 -6.35291 0.71246 1.32041 1.33490 1.37038 1.47207 2.33090 2.55787 2.98149 3.26302 3.54173 3.87104 4.30108 4.40780 4.45703 4.48875 4.55124 4.60826 4.73876 4.85366 4.92631 5.16295 5.19761 5.26569 5.38409 5.51092 5.75387 5.96569 6.39898 6.58031 6.79308 7.30093 7.45901 8.80446 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.044736 B = 0.008039 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.738231 B = 3482.252651 C = 3784.303407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.199 3.801 4 H 0.014 0.986 5 C -0.545 4.545 6 H 0.038 0.962 7 C 0.026 3.974 8 N -0.935 5.935 9 Si 0.926 3.074 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.230 1.230 13 N -0.676 5.676 14 C 0.135 3.865 15 C 0.002 3.998 16 C -0.245 4.245 17 C -0.042 4.042 18 O 0.093 5.907 19 N -0.386 5.386 20 H 0.047 0.953 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.267 0.733 26 H 0.336 0.664 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.187 0.813 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.406 9.234 5.899 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C 0.090 3.910 4 H 0.032 0.968 5 C -0.583 4.583 6 H 0.056 0.944 7 C -0.174 4.174 8 N -0.574 5.574 9 Si 0.749 3.251 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.153 1.153 13 N -0.308 5.308 14 C 0.005 3.995 15 C -0.156 4.156 16 C -0.267 4.267 17 C -0.123 4.123 18 O 0.026 5.974 19 N -0.090 5.090 20 H 0.066 0.934 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.154 0.846 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.204 0.796 30 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -12.516 7.588 6.103 15.858 hybrid contribution 1.481 1.047 -1.488 2.346 sum -11.035 8.635 4.615 14.752 Atomic orbital electron populations 1.21748 0.95618 1.01352 1.01037 1.21764 0.95361 0.97953 0.99643 1.19328 0.92540 0.92066 0.87090 0.96824 1.21566 0.91574 1.43534 1.01640 0.94410 1.25741 0.95832 0.93497 1.02299 1.70123 1.14223 1.43996 1.29039 0.86170 0.81504 0.78234 0.79159 1.19748 1.21264 1.15278 1.60588 1.13273 1.31448 1.25482 1.20299 0.96533 0.92921 0.89708 1.23764 0.97369 0.96084 0.98377 1.23097 1.06620 0.98541 0.98400 1.26860 0.92759 0.93903 0.98768 1.84792 1.51568 1.26024 1.35019 1.73845 1.21706 1.15246 0.98199 0.93416 0.92504 0.92525 0.93915 0.94009 0.92411 0.84648 0.92771 0.90126 0.79563 0.71765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.49 71.98 0.68 -4.39 16 2 C -0.11 -4.79 4.95 30.60 0.15 -4.64 16 3 C 0.20 9.22 1.74 44.17 0.08 9.29 16 4 H 0.01 0.64 6.16 -2.39 -0.01 0.62 16 5 C -0.55 -30.48 9.00 25.60 0.23 -30.25 16 6 H 0.04 2.33 7.62 -2.91 -0.02 2.31 16 7 C 0.03 1.47 5.30 84.66 0.45 1.92 16 8 N -0.94 -57.39 13.96 21.45 0.30 -57.09 16 9 Si 0.93 42.77 25.86 68.60 1.77 44.54 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.23 -9.73 5.65 99.48 0.56 -9.17 16 13 N -0.68 -28.00 5.97 -499.48 -2.98 -30.98 16 14 C 0.14 4.68 5.68 85.56 0.49 5.17 16 15 C 0.00 0.08 6.81 43.58 0.30 0.37 16 16 C -0.24 -5.69 11.12 22.40 0.25 -5.45 16 17 C -0.04 -0.74 12.30 67.17 0.83 0.08 16 18 O 0.09 2.39 11.20 71.60 0.80 3.20 16 19 N -0.39 -12.55 12.07 -49.58 -0.60 -13.15 16 20 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.06 2.07 6.28 -2.39 -0.02 2.05 16 22 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.04 1.90 5.17 -2.38 -0.01 1.88 16 25 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 26 H 0.34 14.45 7.79 -89.69 -0.70 13.75 16 27 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 28 H 0.08 2.78 6.64 -2.39 -0.02 2.77 16 29 H 0.19 3.53 8.06 -2.91 -0.02 3.50 16 30 H 0.27 1.47 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -67.52 251.88 3.05 -64.47 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.30 Total: 16.91 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.45 Total: -27.89 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -3.28 Total: -101.22 kcal Atomic # 8 Polarization: 2.39 SS G_CDS: 0.80 Total: 3.20 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.77 Total: 44.54 kcal Total: -67.52 3.05 -64.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088053575.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.720 kcal (2) G-P(sol) polarization free energy of solvation -67.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds