Wall clock time and date at job start Sun Mar 29 2020 21:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 H 1.09001 * 110.66894 * 307.93977 * 3 2 1 5 5 C 1.51442 * 110.60720 * 185.00183 * 3 2 1 6 6 C 1.50703 * 126.41533 * 61.52505 * 5 3 2 7 7 N 1.27564 * 107.16596 * 241.26051 * 5 3 2 8 8 N 1.39151 * 113.16756 * 0.22774 * 7 5 3 9 9 C 1.46493 * 124.43993 * 179.97438 * 8 7 5 10 10 C 1.50702 * 109.47019 * 270.02552 * 9 8 7 11 11 H 1.08004 * 120.00135 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00204 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99768 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00178 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47272 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.46964 * 119.99408 * 14 12 10 17 17 H 1.48494 * 109.47130 * 239.99586 * 14 12 10 18 18 C 1.34950 * 111.11909 * 359.97438 * 8 7 5 19 19 O 1.21304 * 127.49886 * 179.97438 * 18 8 7 20 20 H 1.09006 * 109.46637 * 299.99833 * 1 2 3 21 21 H 1.09000 * 109.47368 * 59.99335 * 1 2 3 22 22 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46637 * 240.00167 * 2 1 3 24 24 H 1.09000 * 109.47368 * 120.00665 * 2 1 3 25 25 H 1.09002 * 109.47152 * 179.71003 * 6 5 3 26 26 H 1.09001 * 109.46980 * 59.71103 * 6 5 3 27 27 H 1.09004 * 109.47113 * 299.71084 * 6 5 3 28 28 H 1.09004 * 109.47306 * 30.02051 * 9 8 7 29 29 H 1.09005 * 109.47385 * 150.02533 * 9 8 7 30 30 H 0.97000 * 119.99547 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5771 2.0142 -0.8043 5 6 3.5491 1.4742 -0.1236 6 6 4.3636 0.9462 -1.2763 7 7 4.0012 2.0368 0.9283 8 7 3.0014 2.4198 1.8171 9 6 3.2435 3.0845 3.0999 10 6 3.4112 2.0467 4.1797 11 1 3.3437 0.9969 3.9349 12 6 3.6496 2.4373 5.4803 13 7 3.7312 3.7157 5.7785 14 14 3.8567 1.1509 6.8188 15 1 3.7211 -0.2046 6.2279 16 1 5.2005 1.2903 7.4356 17 1 2.8130 1.3445 7.8572 18 6 1.7797 2.0986 1.3425 19 8 0.7065 2.2949 1.8727 20 1 -0.3633 0.5139 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 5.4225 1.1159 -1.0809 26 1 4.0756 1.4632 -2.1917 27 1 4.1819 -0.1226 -1.3901 28 1 4.1491 3.6873 3.0317 29 1 2.3967 3.7269 3.3418 30 1 3.8993 3.9904 6.6935 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107892452.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:17 Heat of formation + Delta-G solvation = 3.170164 kcal Electronic energy + Delta-G solvation = -13924.757522 eV Core-core repulsion = 11528.060449 eV Total energy + Delta-G solvation = -2396.697073 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.71403 -36.75675 -34.63805 -33.07309 -31.87385 -29.06625 -27.73923 -26.19512 -23.20984 -21.95055 -20.16685 -18.87128 -16.74488 -15.95936 -15.56631 -14.94647 -14.62267 -14.17584 -13.43227 -13.13594 -13.07346 -12.65402 -12.35969 -12.23621 -11.97812 -11.56658 -11.45848 -11.20815 -11.03960 -10.76582 -10.75848 -10.31707 -9.92129 -9.59605 -8.90909 -8.51061 -7.76612 -6.12980 -4.18371 2.11133 3.24751 3.27268 3.34304 3.41203 3.43051 4.30557 4.38645 4.44072 4.98189 5.10860 5.21998 5.41946 5.48711 5.59463 5.64663 5.69381 5.87241 5.96409 6.14334 6.23854 6.45109 6.55665 7.12018 7.24200 7.34101 7.82143 8.06887 8.47973 8.64216 8.87563 9.46403 10.95392 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034602 B = 0.009168 C = 0.008556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.008293 B = 3053.361554 C = 3271.809478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.090 4.090 3 C -0.141 4.141 4 H 0.122 0.878 5 C 0.049 3.951 6 C -0.068 4.068 7 N -0.215 5.215 8 N -0.443 5.443 9 C 0.266 3.734 10 C -0.531 4.531 11 H 0.059 0.941 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.904 3.096 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.495 3.505 19 O -0.503 6.503 20 H 0.072 0.928 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 -6.290 -13.829 15.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.128 4.128 3 C -0.165 4.165 4 H 0.139 0.861 5 C -0.145 4.145 6 C -0.127 4.127 7 N -0.022 5.022 8 N -0.262 5.262 9 C 0.148 3.852 10 C -0.569 4.569 11 H 0.078 0.922 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.731 3.269 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.207 1.207 18 C 0.281 3.719 19 O -0.377 6.377 20 H 0.091 0.909 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.668 -5.621 -12.659 13.867 hybrid contribution -0.542 -0.738 0.599 1.095 sum -1.210 -6.359 -12.060 13.687 Atomic orbital electron populations 1.21861 0.94848 1.01662 1.03219 1.21151 0.96708 0.92225 1.02749 1.21834 0.95552 1.00103 0.99033 0.86063 1.25100 0.93087 1.00168 0.96099 1.20190 0.98992 1.00839 0.92649 1.74536 1.19269 1.08574 0.99799 1.50395 1.01985 1.54690 1.19169 1.19459 0.98641 0.92552 0.74501 1.21395 1.49894 0.93212 0.92430 0.92241 1.24930 0.94865 0.95719 0.98484 1.69939 1.48891 1.14478 1.19887 0.86340 0.77776 0.81420 0.81326 1.19738 1.20704 1.20721 1.21110 0.84927 0.79117 0.86759 1.90684 1.26239 1.55115 1.65630 0.90882 0.92772 0.92654 0.90706 0.91512 0.90238 0.90269 0.90201 0.93481 0.93110 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.78 37.16 0.36 -1.73 16 2 C -0.09 -1.22 5.44 -26.73 -0.15 -1.36 16 3 C -0.14 -2.25 3.02 -92.08 -0.28 -2.52 16 4 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 5 C 0.05 0.76 6.93 -78.73 -0.55 0.21 16 6 C -0.07 -0.67 10.47 36.01 0.38 -0.29 16 7 N -0.21 -4.42 12.02 35.53 0.43 -4.00 16 8 N -0.44 -10.63 3.52 -61.07 -0.22 -10.85 16 9 C 0.27 7.35 5.99 -5.20 -0.03 7.32 16 10 C -0.53 -15.64 9.39 -34.44 -0.32 -15.97 16 11 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 12 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 13 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 14 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.50 11.00 7.58 -10.43 -0.08 10.92 16 19 O -0.50 -12.57 16.23 5.54 0.09 -12.48 16 20 H 0.07 1.20 6.45 -51.93 -0.33 0.87 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.75 8.03 -51.93 -0.42 0.34 16 24 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.63 8.05 -51.93 -0.42 0.21 16 28 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.05 1.50 8.04 -51.93 -0.42 1.08 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 263.64 15.07 3.97 3.97 Total: -1.00 -33.37 263.64 -4.86 -38.23 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -4.09 Total: -4.38 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -0.76 Total: -1.70 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.95 Total: -40.84 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.37 -4.86 -38.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107892452.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.401 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds