Wall clock time and date at job start Sun Mar 29 2020 21:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 H 1.09001 * 110.66894 * 307.93977 * 3 2 1 5 5 C 1.51442 * 110.60720 * 185.00183 * 3 2 1 6 6 C 1.50703 * 126.41533 * 61.52505 * 5 3 2 7 7 N 1.27564 * 107.16596 * 241.26051 * 5 3 2 8 8 N 1.39151 * 113.16756 * 0.22774 * 7 5 3 9 9 C 1.46493 * 124.43993 * 179.97438 * 8 7 5 10 10 C 1.50702 * 109.47019 * 270.02552 * 9 8 7 11 11 H 1.08004 * 120.00135 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00204 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99768 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00178 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47272 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.46964 * 119.99408 * 14 12 10 17 17 H 1.48494 * 109.47130 * 239.99586 * 14 12 10 18 18 C 1.34950 * 111.11909 * 359.97438 * 8 7 5 19 19 O 1.21304 * 127.49886 * 179.97438 * 18 8 7 20 20 H 1.09006 * 109.46637 * 299.99833 * 1 2 3 21 21 H 1.09000 * 109.47368 * 59.99335 * 1 2 3 22 22 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46637 * 240.00167 * 2 1 3 24 24 H 1.09000 * 109.47368 * 120.00665 * 2 1 3 25 25 H 1.09002 * 109.47152 * 179.71003 * 6 5 3 26 26 H 1.09001 * 109.46980 * 59.71103 * 6 5 3 27 27 H 1.09004 * 109.47113 * 299.71084 * 6 5 3 28 28 H 1.09004 * 109.47306 * 30.02051 * 9 8 7 29 29 H 1.09005 * 109.47385 * 150.02533 * 9 8 7 30 30 H 0.97000 * 119.99547 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5771 2.0142 -0.8043 5 6 3.5491 1.4742 -0.1236 6 6 4.3636 0.9462 -1.2763 7 7 4.0012 2.0368 0.9283 8 7 3.0014 2.4198 1.8171 9 6 3.2435 3.0845 3.0999 10 6 3.4112 2.0467 4.1797 11 1 3.3437 0.9969 3.9349 12 6 3.6496 2.4373 5.4803 13 7 3.7312 3.7157 5.7785 14 14 3.8567 1.1509 6.8188 15 1 3.7211 -0.2046 6.2279 16 1 5.2005 1.2903 7.4356 17 1 2.8130 1.3445 7.8572 18 6 1.7797 2.0986 1.3425 19 8 0.7065 2.2949 1.8727 20 1 -0.3633 0.5139 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 5.4225 1.1159 -1.0809 26 1 4.0756 1.4632 -2.1917 27 1 4.1819 -0.1226 -1.3901 28 1 4.1491 3.6873 3.0317 29 1 2.3967 3.7269 3.3418 30 1 3.8993 3.9904 6.6935 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107892452.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:17 Heat of formation + Delta-G solvation = -20.866346 kcal Electronic energy + Delta-G solvation = -13925.799823 eV Core-core repulsion = 11528.060449 eV Total energy + Delta-G solvation = -2397.739374 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.25991 -38.44690 -36.26745 -34.90493 -33.42425 -30.61992 -29.11300 -27.88595 -25.08143 -23.35616 -21.59686 -20.41220 -18.89890 -17.74104 -17.13395 -16.50137 -16.41683 -15.73556 -14.68082 -14.60320 -14.46212 -14.25205 -13.71974 -13.65136 -13.24498 -13.10900 -13.07060 -12.73619 -12.66707 -12.52697 -12.27791 -12.05408 -11.62895 -11.32607 -10.78925 -10.47344 -9.53874 -8.35592 -6.52594 0.73980 1.30823 1.33440 1.45231 1.65188 1.79282 2.31341 2.88438 2.97491 3.16172 3.78651 3.94672 4.32136 4.42641 4.53715 4.72652 4.80334 4.84613 4.89387 4.98690 5.03820 5.16455 5.24480 5.33988 5.44885 5.55009 5.67771 5.83454 6.51462 6.82852 7.05587 7.19678 8.72598 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034602 B = 0.009168 C = 0.008556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.008293 B = 3053.361554 C = 3271.809478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.085 4.085 3 C -0.131 4.131 4 H 0.159 0.841 5 C 0.097 3.903 6 C -0.070 4.070 7 N -0.277 5.277 8 N -0.467 5.467 9 C 0.282 3.718 10 C -0.553 4.553 11 H 0.047 0.953 12 C 0.011 3.989 13 N -0.924 5.924 14 Si 0.977 3.023 15 H -0.270 1.270 16 H -0.264 1.264 17 H -0.272 1.272 18 C 0.471 3.529 19 O -0.552 6.552 20 H 0.028 0.972 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.130 0.870 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.027 0.973 29 H 0.015 0.985 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 -8.638 -16.243 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.123 4.123 3 C -0.154 4.154 4 H 0.176 0.824 5 C -0.095 4.095 6 C -0.128 4.128 7 N -0.084 5.084 8 N -0.284 5.284 9 C 0.162 3.838 10 C -0.591 4.591 11 H 0.066 0.934 12 C -0.189 4.189 13 N -0.562 5.562 14 Si 0.800 3.200 15 H -0.195 1.195 16 H -0.189 1.189 17 H -0.197 1.197 18 C 0.260 3.740 19 O -0.429 6.429 20 H 0.047 0.953 21 H 0.096 0.904 22 H 0.095 0.905 23 H 0.148 0.852 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.067 -7.972 -15.108 17.082 hybrid contribution -0.721 -0.023 1.175 1.379 sum -0.788 -7.995 -13.933 16.084 Atomic orbital electron populations 1.21845 0.94616 1.02763 1.02200 1.21268 0.96934 0.90137 1.03973 1.21988 0.96204 1.01576 0.95619 0.82409 1.26339 0.93415 0.94717 0.95079 1.20618 0.98058 1.03045 0.91077 1.74625 1.18440 1.13591 1.01722 1.50250 1.03788 1.55416 1.18984 1.18811 0.95942 0.92078 0.76959 1.21566 1.51006 0.92826 0.93747 0.93448 1.25919 0.93933 0.98157 1.00851 1.70044 1.48874 1.16424 1.20901 0.85229 0.78580 0.78277 0.77887 1.19465 1.18914 1.19744 1.22273 0.83783 0.78841 0.89116 1.90633 1.27543 1.57128 1.67578 0.95291 0.90395 0.90506 0.85206 0.94254 0.90130 0.86301 0.86658 0.95502 0.96754 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.78 71.98 0.70 -3.06 16 2 C -0.08 -2.01 5.44 30.59 0.17 -1.84 16 3 C -0.13 -3.84 3.02 -11.74 -0.04 -3.88 16 4 H 0.16 3.60 8.14 -2.39 -0.02 3.58 16 5 C 0.10 2.74 6.93 46.83 0.32 3.06 16 6 C -0.07 -0.98 10.47 71.24 0.75 -0.23 16 7 N -0.28 -11.48 12.02 -40.84 -0.49 -11.97 16 8 N -0.47 -23.53 3.52 -465.39 -1.64 -25.17 16 9 C 0.28 16.77 5.99 85.63 0.51 17.29 16 10 C -0.55 -34.29 9.39 25.60 0.24 -34.05 16 11 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 12 C 0.01 0.67 5.46 84.65 0.46 1.14 16 13 N -0.92 -57.14 13.29 21.45 0.28 -56.85 16 14 Si 0.98 46.33 29.54 68.60 2.03 48.35 16 15 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 16 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 17 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 18 C 0.47 21.70 7.58 87.94 0.67 22.36 16 19 O -0.55 -29.31 16.23 -3.10 -0.05 -29.36 16 20 H 0.03 0.95 6.45 -2.38 -0.02 0.93 16 21 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.13 1.74 8.03 -2.38 -0.02 1.72 16 24 H 0.04 1.16 8.12 -2.39 -0.02 1.14 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.12 0.97 8.05 -2.38 -0.02 0.95 16 28 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.01 0.94 8.04 -2.38 -0.02 0.92 16 30 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -80.31 263.64 5.04 -75.28 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: 1.12 Total: -1.06 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 3.79 Total: 0.79 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -1.85 Total: -94.00 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -80.31 5.04 -75.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107892452.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.412 kcal (2) G-P(sol) polarization free energy of solvation -80.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds