Wall clock time and date at job start Sun Mar 29 2020 21:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47298 * 2 1 4 4 H 1.09006 * 110.66286 * 52.06749 * 3 2 1 5 5 C 1.51437 * 110.61042 * 175.00096 * 3 2 1 6 6 C 1.50702 * 126.41385 * 298.48437 * 5 3 2 7 7 N 1.27565 * 107.16728 * 118.51753 * 5 3 2 8 8 N 1.39150 * 113.16269 * 359.97438 * 7 5 3 9 9 C 1.46500 * 124.43476 * 180.02562 * 8 7 5 10 10 C 1.50706 * 109.47299 * 270.02306 * 9 8 7 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46758 * 269.72576 * 14 12 10 16 16 H 1.48499 * 109.47026 * 29.72423 * 14 12 10 17 17 H 1.48496 * 109.47474 * 149.72459 * 14 12 10 18 18 C 1.34951 * 111.12503 * 0.26631 * 8 7 5 19 19 O 1.21296 * 127.50419 * 179.70130 * 18 8 7 20 20 H 1.09003 * 109.46996 * 299.99515 * 1 2 3 21 21 H 1.08994 * 109.47590 * 59.99535 * 1 2 3 22 22 H 1.09001 * 109.47516 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46996 * 240.00485 * 2 1 3 24 24 H 1.09002 * 109.47346 * 120.00261 * 2 1 3 25 25 H 1.09004 * 109.46808 * 180.02562 * 6 5 3 26 26 H 1.08998 * 109.47204 * 300.00928 * 6 5 3 27 27 H 1.08996 * 109.47330 * 60.01806 * 6 5 3 28 28 H 1.09004 * 109.47078 * 150.03067 * 9 8 7 29 29 H 1.08993 * 109.47364 * 30.02839 * 9 8 7 30 30 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5771 2.0142 0.8045 5 6 3.5490 1.4744 0.1235 6 6 4.3636 0.9461 1.2761 7 7 4.0014 2.0327 -0.9305 8 7 3.0014 2.4166 -1.8187 9 6 3.2436 3.0772 -3.1037 10 6 3.2482 4.5714 -2.9074 11 1 3.0872 4.9872 -1.9237 12 6 3.4578 5.4075 -3.9834 13 7 3.6592 4.9010 -5.1803 14 14 3.4642 7.2596 -3.7399 15 1 2.0882 7.7875 -3.9224 16 1 3.9384 7.5770 -2.3689 17 1 4.3709 7.8866 -4.7348 18 6 1.7790 2.1052 -1.3391 19 8 0.7053 2.3097 -1.8650 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 5.4227 1.1118 1.0785 26 1 4.0791 1.4664 2.1907 27 1 4.1783 -0.1216 1.3928 28 1 2.4556 2.8056 -3.8062 29 1 4.2083 2.7598 -3.4993 30 1 3.6562 3.9393 -5.3067 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107892457.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:19 Heat of formation + Delta-G solvation = 0.001084 kcal Electronic energy + Delta-G solvation = -13908.457985 eV Core-core repulsion = 11511.623491 eV Total energy + Delta-G solvation = -2396.834495 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.81224 -36.85124 -34.82686 -33.31568 -31.93474 -28.95212 -27.82234 -25.87358 -23.24875 -22.08883 -20.27352 -19.03859 -17.17718 -16.32547 -15.26894 -15.03148 -14.73489 -13.77440 -13.59454 -13.36548 -13.04210 -12.90632 -12.41753 -12.32666 -12.07087 -11.67440 -11.58725 -11.18635 -11.17963 -10.92869 -10.68123 -10.15117 -10.06712 -9.13019 -9.00168 -8.46522 -7.77440 -6.48264 -4.21202 2.03019 3.17188 3.30422 3.41465 3.44676 3.60902 4.21316 4.34781 4.48247 4.87853 5.02232 5.27478 5.33704 5.39497 5.52761 5.57237 5.63456 5.78767 5.86957 6.05745 6.11639 6.34467 6.44010 6.79602 7.00511 7.15405 7.85569 8.27875 8.37151 8.59296 8.71469 9.47433 10.89413 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.040379 B = 0.008687 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.267662 B = 3222.273815 C = 3529.599300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.088 4.088 3 C -0.142 4.142 4 H 0.123 0.877 5 C 0.052 3.948 6 C -0.069 4.069 7 N -0.215 5.215 8 N -0.441 5.441 9 C 0.257 3.743 10 C -0.612 4.612 11 H 0.053 0.947 12 C 0.023 3.977 13 N -0.906 5.906 14 Si 1.078 2.922 15 H -0.286 1.286 16 H -0.288 1.288 17 H -0.281 1.281 18 C 0.496 3.504 19 O -0.502 6.502 20 H 0.055 0.945 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 -9.429 13.003 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.127 4.127 3 C -0.165 4.165 4 H 0.141 0.859 5 C -0.141 4.141 6 C -0.127 4.127 7 N -0.022 5.022 8 N -0.260 5.260 9 C 0.139 3.861 10 C -0.650 4.650 11 H 0.072 0.928 12 C -0.182 4.182 13 N -0.541 5.541 14 Si 0.905 3.095 15 H -0.212 1.212 16 H -0.214 1.214 17 H -0.206 1.206 18 C 0.282 3.718 19 O -0.376 6.376 20 H 0.074 0.926 21 H 0.090 0.910 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.448 -7.464 11.181 13.450 hybrid contribution -0.887 -1.510 1.101 2.069 sum -1.335 -8.974 12.282 15.270 Atomic orbital electron populations 1.21864 0.94748 1.01671 1.03368 1.21143 0.96776 0.92081 1.02654 1.21832 0.95591 0.99981 0.99142 0.85894 1.25127 0.93115 0.99693 0.96209 1.20203 0.99011 1.00782 0.92711 1.74540 1.19160 1.08007 1.00529 1.50140 1.02152 1.54421 1.19242 1.19476 0.97438 0.92909 0.76279 1.22224 1.54793 0.90513 0.97492 0.92823 1.25882 0.93194 1.07007 0.92109 1.70788 1.45479 1.15000 1.22855 0.83418 0.77023 0.73677 0.75363 1.21208 1.21423 1.20649 1.21109 0.84796 0.79061 0.86843 1.90686 1.26056 1.55265 1.65565 0.92587 0.90989 0.92578 0.91788 0.90531 0.90191 0.90106 0.90147 0.94211 0.94496 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.78 37.16 0.36 -1.62 16 2 C -0.09 -1.11 5.45 -26.73 -0.15 -1.25 16 3 C -0.14 -2.25 3.01 -92.08 -0.28 -2.53 16 4 H 0.12 1.75 8.14 -51.93 -0.42 1.33 16 5 C 0.05 0.81 6.93 -78.73 -0.55 0.26 16 6 C -0.07 -0.67 10.47 36.01 0.38 -0.29 16 7 N -0.22 -4.47 12.02 35.53 0.43 -4.04 16 8 N -0.44 -10.65 3.52 -61.06 -0.22 -10.87 16 9 C 0.26 7.10 5.30 -5.19 -0.03 7.07 16 10 C -0.61 -18.31 9.39 -34.44 -0.32 -18.63 16 11 H 0.05 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.02 0.67 5.46 -17.82 -0.10 0.57 16 13 N -0.91 -27.89 13.65 55.43 0.76 -27.14 16 14 Si 1.08 26.11 29.90 -169.99 -5.08 21.02 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.50 11.09 7.59 -10.43 -0.08 11.01 16 19 O -0.50 -12.63 16.26 5.54 0.09 -12.54 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.07 1.13 6.48 -51.93 -0.34 0.79 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 24 H 0.08 0.71 8.02 -51.93 -0.42 0.29 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 28 H 0.04 1.16 7.91 -51.93 -0.41 0.75 16 29 H 0.04 1.03 8.00 -51.93 -0.42 0.62 16 30 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 LS Contribution 262.38 15.07 3.95 3.95 Total: -1.00 -34.55 262.38 -4.86 -39.41 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: -4.03 Total: -4.39 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -0.76 Total: -5.41 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.97 Total: -42.05 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.02 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -34.55 -4.86 -39.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107892457.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.412 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds