Wall clock time and date at job start Sun Mar 29 2020 21:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47298 * 2 1 4 4 H 1.09006 * 110.66286 * 52.06749 * 3 2 1 5 5 C 1.51437 * 110.61042 * 175.00096 * 3 2 1 6 6 C 1.50702 * 126.41385 * 298.48437 * 5 3 2 7 7 N 1.27565 * 107.16728 * 118.51753 * 5 3 2 8 8 N 1.39150 * 113.16269 * 359.97438 * 7 5 3 9 9 C 1.46500 * 124.43476 * 180.02562 * 8 7 5 10 10 C 1.50706 * 109.47299 * 270.02306 * 9 8 7 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46758 * 269.72576 * 14 12 10 16 16 H 1.48499 * 109.47026 * 29.72423 * 14 12 10 17 17 H 1.48496 * 109.47474 * 149.72459 * 14 12 10 18 18 C 1.34951 * 111.12503 * 0.26631 * 8 7 5 19 19 O 1.21296 * 127.50419 * 179.70130 * 18 8 7 20 20 H 1.09003 * 109.46996 * 299.99515 * 1 2 3 21 21 H 1.08994 * 109.47590 * 59.99535 * 1 2 3 22 22 H 1.09001 * 109.47516 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46996 * 240.00485 * 2 1 3 24 24 H 1.09002 * 109.47346 * 120.00261 * 2 1 3 25 25 H 1.09004 * 109.46808 * 180.02562 * 6 5 3 26 26 H 1.08998 * 109.47204 * 300.00928 * 6 5 3 27 27 H 1.08996 * 109.47330 * 60.01806 * 6 5 3 28 28 H 1.09004 * 109.47078 * 150.03067 * 9 8 7 29 29 H 1.08993 * 109.47364 * 30.02839 * 9 8 7 30 30 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5771 2.0142 0.8045 5 6 3.5490 1.4744 0.1235 6 6 4.3636 0.9461 1.2761 7 7 4.0014 2.0327 -0.9305 8 7 3.0014 2.4166 -1.8187 9 6 3.2436 3.0772 -3.1037 10 6 3.2482 4.5714 -2.9074 11 1 3.0872 4.9872 -1.9237 12 6 3.4578 5.4075 -3.9834 13 7 3.6592 4.9010 -5.1803 14 14 3.4642 7.2596 -3.7399 15 1 2.0882 7.7875 -3.9224 16 1 3.9384 7.5770 -2.3689 17 1 4.3709 7.8866 -4.7348 18 6 1.7790 2.1052 -1.3391 19 8 0.7053 2.3097 -1.8650 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8900 25 1 5.4227 1.1118 1.0785 26 1 4.0791 1.4664 2.1907 27 1 4.1783 -0.1216 1.3928 28 1 2.4556 2.8056 -3.8062 29 1 4.2083 2.7598 -3.4993 30 1 3.6562 3.9393 -5.3067 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107892457.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:18 Heat of formation + Delta-G solvation = -25.081587 kcal Electronic energy + Delta-G solvation = -13909.545652 eV Core-core repulsion = 11511.623491 eV Total energy + Delta-G solvation = -2397.922161 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.36324 -38.55054 -36.54835 -35.06800 -33.45037 -30.45196 -29.18012 -27.62408 -25.20246 -23.47633 -21.69767 -20.58491 -19.34010 -17.96521 -16.94289 -16.50441 -16.26794 -15.72551 -15.01143 -14.68064 -14.46664 -14.36933 -13.90628 -13.69802 -13.41404 -13.15324 -13.13834 -12.77627 -12.61157 -12.48568 -12.09196 -11.99321 -11.41414 -11.20797 -10.76968 -10.56982 -9.61702 -8.85673 -6.62898 0.65402 1.42952 1.51514 1.54022 1.67706 1.73613 2.44817 2.80819 2.97446 3.07709 3.70920 3.88564 4.23701 4.37866 4.44615 4.51527 4.56426 4.76358 4.79500 4.93891 4.99608 5.10788 5.15911 5.23418 5.40784 5.53774 5.57140 5.92219 6.26518 6.72592 6.95124 7.16726 8.49735 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.040379 B = 0.008687 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.267662 B = 3222.273815 C = 3529.599300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.082 4.082 3 C -0.131 4.131 4 H 0.152 0.848 5 C 0.101 3.899 6 C -0.070 4.070 7 N -0.279 5.279 8 N -0.465 5.465 9 C 0.269 3.731 10 C -0.628 4.628 11 H 0.041 0.959 12 C -0.026 4.026 13 N -0.922 5.922 14 Si 1.126 2.874 15 H -0.272 1.272 16 H -0.272 1.272 17 H -0.269 1.269 18 C 0.472 3.528 19 O -0.551 6.551 20 H 0.073 0.927 21 H 0.028 0.972 22 H 0.080 0.920 23 H 0.047 0.953 24 H 0.131 0.869 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.009 0.991 29 H 0.023 0.977 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.414 -10.178 16.446 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.120 4.120 3 C -0.154 4.154 4 H 0.169 0.831 5 C -0.092 4.092 6 C -0.128 4.128 7 N -0.086 5.086 8 N -0.282 5.282 9 C 0.149 3.851 10 C -0.666 4.666 11 H 0.059 0.941 12 C -0.224 4.224 13 N -0.558 5.558 14 Si 0.945 3.055 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.193 1.193 18 C 0.260 3.740 19 O -0.428 6.428 20 H 0.092 0.908 21 H 0.047 0.953 22 H 0.099 0.901 23 H 0.066 0.934 24 H 0.149 0.851 25 H 0.099 0.901 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.027 0.973 29 H 0.041 0.959 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.001 -8.256 14.652 16.819 hybrid contribution -1.017 -1.426 0.167 1.759 sum -1.017 -9.682 14.819 17.731 Atomic orbital electron populations 1.21853 0.94706 1.02896 1.02090 1.21275 0.96809 0.89480 1.04428 1.21994 0.96200 1.01878 0.95367 0.83097 1.26381 0.93447 0.94221 0.95126 1.20642 0.98041 1.03298 0.90861 1.74637 1.18312 1.13065 1.02549 1.50041 1.03965 1.55083 1.19111 1.18906 0.95355 0.92428 0.78448 1.22452 1.55130 0.91893 0.97099 0.94076 1.27543 0.91797 1.11711 0.91390 1.70901 1.46799 1.14381 1.23670 0.82844 0.78017 0.68168 0.76437 1.19786 1.19654 1.19325 1.22304 0.83658 0.78829 0.89162 1.90636 1.27378 1.57346 1.67452 0.90822 0.95319 0.90104 0.93420 0.85062 0.90084 0.86624 0.86040 0.97314 0.95938 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.78 71.98 0.70 -2.86 16 2 C -0.08 -1.77 5.45 30.59 0.17 -1.60 16 3 C -0.13 -3.86 3.01 -11.74 -0.04 -3.89 16 4 H 0.15 3.72 8.14 -2.38 -0.02 3.70 16 5 C 0.10 2.84 6.93 46.83 0.32 3.16 16 6 C -0.07 -0.97 10.47 71.24 0.75 -0.22 16 7 N -0.28 -11.58 12.02 -40.85 -0.49 -12.07 16 8 N -0.46 -23.45 3.52 -465.39 -1.64 -25.09 16 9 C 0.27 15.90 5.30 85.64 0.45 16.35 16 10 C -0.63 -39.22 9.39 25.60 0.24 -38.98 16 11 H 0.04 2.60 7.81 -2.91 -0.02 2.58 16 12 C -0.03 -1.55 5.46 84.65 0.46 -1.09 16 13 N -0.92 -58.71 13.65 21.45 0.29 -58.41 16 14 Si 1.13 52.75 29.90 68.60 2.05 54.80 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 C 0.47 21.76 7.59 87.94 0.67 22.43 16 19 O -0.55 -29.34 16.26 -3.08 -0.05 -29.39 16 20 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.03 0.89 6.48 -2.39 -0.02 0.88 16 22 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.05 1.21 8.12 -2.39 -0.02 1.19 16 24 H 0.13 1.51 8.02 -2.39 -0.02 1.49 16 25 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.12 0.85 8.04 -2.39 -0.02 0.83 16 28 H 0.01 0.57 7.91 -2.39 -0.02 0.55 16 29 H 0.02 1.36 8.00 -2.39 -0.02 1.34 16 30 H 0.26 16.51 7.22 -92.71 -0.67 15.84 16 Total: -1.00 -82.56 262.38 5.11 -77.45 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: 1.22 Total: -0.58 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 3.73 Total: -6.70 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -1.84 Total: -95.57 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.05 Total: -29.39 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.05 Total: 54.80 kcal Total: -82.56 5.11 -77.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107892457.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.363 kcal (2) G-P(sol) polarization free energy of solvation -82.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds