Wall clock time and date at job start Sun Mar 29 2020 21:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46870 * 2 1 4 4 N 1.27564 * 126.41980 * 359.96812 * 3 2 1 5 5 N 1.39151 * 113.16659 * 180.02562 * 4 3 2 6 6 C 1.46493 * 124.44148 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47128 * 270.02103 * 6 5 4 8 8 H 1.08005 * 119.99758 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00102 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47483 * 269.99808 * 11 9 7 13 13 H 1.48499 * 109.47134 * 30.00322 * 11 9 7 14 14 H 1.48507 * 109.46904 * 150.00145 * 11 9 7 15 15 C 1.34950 * 111.12107 * 0.26541 * 5 4 3 16 16 O 1.21296 * 127.50558 * 179.71336 * 15 5 4 17 17 C 1.51447 * 126.41236 * 180.02562 * 3 2 1 18 18 H 1.08997 * 110.60308 * 298.62819 * 17 3 2 19 19 C 1.52995 * 110.60962 * 61.44275 * 17 3 2 20 20 H 1.09003 * 109.46894 * 60.00141 * 1 2 3 21 21 H 1.08992 * 109.47232 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46972 * 300.00680 * 1 2 3 23 23 H 1.08994 * 109.46911 * 239.99651 * 2 1 3 24 24 H 1.09000 * 109.46736 * 119.99350 * 2 1 3 25 25 H 1.09001 * 109.47786 * 150.02376 * 6 5 4 26 26 H 1.09006 * 109.47401 * 30.01961 * 6 5 4 27 27 H 0.97001 * 119.99646 * 359.97438 * 10 9 7 28 28 H 1.09001 * 109.47180 * 59.99734 * 19 17 3 29 29 H 1.09002 * 109.47294 * 179.97438 * 19 17 3 30 30 H 1.08997 * 109.47301 * 300.00411 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.3169 2.4770 -0.0006 5 7 2.0691 3.6477 -0.0010 6 6 1.5006 4.9978 -0.0011 7 6 1.3048 5.4603 -1.4220 8 1 1.5771 4.8133 -2.2429 9 6 0.7781 6.7092 -1.6741 10 7 0.4469 7.4973 -0.6746 11 14 0.5362 7.2827 -3.4354 12 1 1.7620 7.9787 -3.9022 13 1 0.2711 6.1093 -4.3060 14 1 -0.6172 8.2161 -3.4980 15 6 3.3910 3.3763 -0.0065 16 8 4.3079 4.1704 -0.0131 17 6 3.4810 1.8622 -0.0005 18 1 3.9908 1.5063 0.8947 19 6 4.1952 1.3645 -1.2587 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 2.1800 5.6783 0.5121 26 1 0.5395 4.9875 0.5133 27 1 0.5729 7.1996 0.2400 28 1 3.7018 1.7713 -2.1415 29 1 5.2345 1.6924 -1.2404 30 1 4.1578 0.2756 -1.2911 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110454763.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:50 Heat of formation + Delta-G solvation = 0.200282 kcal Electronic energy + Delta-G solvation = -13900.854993 eV Core-core repulsion = 11504.029136 eV Total energy + Delta-G solvation = -2396.825857 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.77106 -36.95631 -34.64057 -33.12961 -32.11396 -30.03089 -26.76552 -25.09898 -23.92305 -22.38590 -20.34244 -18.75896 -17.24867 -15.86079 -15.79441 -14.72418 -14.60404 -14.33715 -13.83008 -13.56876 -12.98197 -12.58679 -12.19039 -12.10769 -11.99344 -11.65557 -11.47922 -11.40787 -11.14471 -10.91019 -10.68455 -10.17665 -10.11065 -9.12801 -9.04460 -8.46402 -7.77589 -6.48062 -4.20929 2.03967 3.15266 3.31989 3.41358 3.44536 3.60687 4.17405 4.30989 4.48142 4.99937 5.13150 5.26166 5.27954 5.28160 5.39222 5.68641 5.76577 5.79760 5.92511 6.04869 6.16488 6.29732 6.44700 6.79624 7.01308 7.15213 7.85753 8.27752 8.37264 8.59177 8.71525 9.47636 10.89601 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.032483 B = 0.009319 C = 0.008463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.789022 B = 3003.804490 C = 3307.738465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C 0.053 3.947 4 N -0.210 5.210 5 N -0.440 5.440 6 C 0.257 3.743 7 C -0.611 4.611 8 H 0.053 0.947 9 C 0.023 3.977 10 N -0.906 5.906 11 Si 1.078 2.922 12 H -0.286 1.286 13 H -0.288 1.288 14 H -0.281 1.281 15 C 0.494 3.506 16 O -0.505 6.505 17 C -0.143 4.143 18 H 0.123 0.877 19 C -0.119 4.119 20 H 0.063 0.937 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.037 0.963 27 H 0.268 0.732 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 -15.849 0.901 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.077 4.077 3 C -0.141 4.141 4 N -0.017 5.017 5 N -0.259 5.259 6 C 0.139 3.861 7 C -0.649 4.649 8 H 0.072 0.928 9 C -0.182 4.182 10 N -0.541 5.541 11 Si 0.905 3.095 12 H -0.212 1.212 13 H -0.214 1.214 14 H -0.207 1.207 15 C 0.280 3.720 16 O -0.379 6.379 17 C -0.167 4.167 18 H 0.141 0.859 19 C -0.178 4.178 20 H 0.082 0.918 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.494 -13.503 -0.008 13.585 hybrid contribution 1.348 -1.371 0.966 2.152 sum 2.842 -14.874 0.958 15.173 Atomic orbital electron populations 1.21653 0.94019 1.01337 1.03541 1.20000 0.96924 0.87643 1.03087 1.25151 0.91576 0.95829 1.01510 1.74519 1.24684 0.92674 1.09792 1.50157 1.03864 1.05368 1.66530 1.19477 0.94290 0.73315 0.99026 1.22216 1.47233 1.04062 0.91422 0.92824 1.25876 0.93212 0.92745 1.06367 1.70789 1.44787 1.38452 1.00102 0.83424 0.77007 0.75690 0.73392 1.21213 1.21416 1.20666 1.21162 0.83816 0.90264 0.76769 1.90703 1.41842 1.55538 1.49814 1.21727 0.96609 0.95452 1.02905 0.85929 1.21417 1.00411 1.01091 0.94868 0.91835 0.92407 0.92057 0.89558 0.89660 0.94235 0.94476 0.92187 0.92055 0.91251 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.42 37.16 0.35 -1.27 16 2 C -0.04 -0.39 6.54 -27.88 -0.18 -0.57 16 3 C 0.05 0.82 6.62 -78.72 -0.52 0.30 16 4 N -0.21 -4.30 11.33 35.53 0.40 -3.90 16 5 N -0.44 -10.62 3.52 -61.06 -0.22 -10.84 16 6 C 0.26 7.09 5.30 -5.19 -0.03 7.06 16 7 C -0.61 -18.22 9.39 -34.44 -0.32 -18.54 16 8 H 0.05 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.02 0.67 5.46 -17.82 -0.10 0.57 16 10 N -0.91 -27.86 13.65 55.43 0.76 -27.11 16 11 Si 1.08 26.07 29.90 -169.99 -5.08 20.98 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.49 11.15 7.75 -10.42 -0.08 11.07 16 16 O -0.51 -13.02 17.82 5.54 0.10 -12.92 16 17 C -0.14 -2.27 3.63 -92.08 -0.33 -2.61 16 18 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 19 C -0.12 -1.58 9.29 37.16 0.35 -1.24 16 20 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.04 1.15 7.91 -51.93 -0.41 0.74 16 26 H 0.04 1.03 8.01 -51.93 -0.42 0.62 16 27 H 0.27 8.16 7.22 -40.82 -0.29 7.86 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 265.18 15.07 4.00 4.00 Total: -1.00 -34.59 265.18 -5.05 -39.64 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -4.13 Total: -4.63 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -0.87 Total: -5.23 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.94 Total: -41.84 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.10 Total: -12.92 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.98 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.59 -5.05 -39.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110454763.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.840 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds