Wall clock time and date at job start Sun Mar 29 2020 21:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46870 * 2 1 4 4 N 1.27564 * 126.41980 * 359.96812 * 3 2 1 5 5 N 1.39151 * 113.16659 * 180.02562 * 4 3 2 6 6 C 1.46493 * 124.44148 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47128 * 270.02103 * 6 5 4 8 8 H 1.08005 * 119.99758 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00102 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47483 * 269.99808 * 11 9 7 13 13 H 1.48499 * 109.47134 * 30.00322 * 11 9 7 14 14 H 1.48507 * 109.46904 * 150.00145 * 11 9 7 15 15 C 1.34950 * 111.12107 * 0.26541 * 5 4 3 16 16 O 1.21296 * 127.50558 * 179.71336 * 15 5 4 17 17 C 1.51447 * 126.41236 * 180.02562 * 3 2 1 18 18 H 1.08997 * 110.60308 * 298.62819 * 17 3 2 19 19 C 1.52995 * 110.60962 * 61.44275 * 17 3 2 20 20 H 1.09003 * 109.46894 * 60.00141 * 1 2 3 21 21 H 1.08992 * 109.47232 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46972 * 300.00680 * 1 2 3 23 23 H 1.08994 * 109.46911 * 239.99651 * 2 1 3 24 24 H 1.09000 * 109.46736 * 119.99350 * 2 1 3 25 25 H 1.09001 * 109.47786 * 150.02376 * 6 5 4 26 26 H 1.09006 * 109.47401 * 30.01961 * 6 5 4 27 27 H 0.97001 * 119.99646 * 359.97438 * 10 9 7 28 28 H 1.09001 * 109.47180 * 59.99734 * 19 17 3 29 29 H 1.09002 * 109.47294 * 179.97438 * 19 17 3 30 30 H 1.08997 * 109.47301 * 300.00411 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.3169 2.4770 -0.0006 5 7 2.0691 3.6477 -0.0010 6 6 1.5006 4.9978 -0.0011 7 6 1.3048 5.4603 -1.4220 8 1 1.5771 4.8133 -2.2429 9 6 0.7781 6.7092 -1.6741 10 7 0.4469 7.4973 -0.6746 11 14 0.5362 7.2827 -3.4354 12 1 1.7620 7.9787 -3.9022 13 1 0.2711 6.1093 -4.3060 14 1 -0.6172 8.2161 -3.4980 15 6 3.3910 3.3763 -0.0065 16 8 4.3079 4.1704 -0.0131 17 6 3.4810 1.8622 -0.0005 18 1 3.9908 1.5063 0.8947 19 6 4.1952 1.3645 -1.2587 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 2.1800 5.6783 0.5121 26 1 0.5395 4.9875 0.5133 27 1 0.5729 7.1996 0.2400 28 1 3.7018 1.7713 -2.1415 29 1 5.2345 1.6924 -1.2404 30 1 4.1578 0.2756 -1.2911 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110454763.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:50 Heat of formation + Delta-G solvation = -24.791668 kcal Electronic energy + Delta-G solvation = -13901.938725 eV Core-core repulsion = 11504.029136 eV Total energy + Delta-G solvation = -2397.909589 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.33597 -38.64973 -36.46752 -34.84551 -33.38086 -31.64593 -28.68818 -26.41446 -25.59693 -23.99775 -21.85531 -20.27869 -19.35994 -17.66647 -17.34676 -16.29106 -15.93353 -15.73853 -15.44085 -15.18227 -14.75802 -14.04218 -13.88080 -13.53763 -13.28896 -13.19185 -13.03228 -12.77762 -12.61570 -12.33272 -11.99868 -11.95298 -11.59021 -11.19488 -10.77783 -10.61690 -9.62593 -8.85496 -6.62494 0.64938 1.42485 1.50105 1.53538 1.67584 1.73225 2.44639 2.78719 2.96768 3.01932 3.76301 3.99386 4.24310 4.39366 4.45717 4.49340 4.53990 4.72029 4.76748 4.85896 5.07728 5.12380 5.20725 5.24079 5.39492 5.56801 5.59639 5.92168 6.26732 6.70383 6.94602 7.16794 8.50020 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.032483 B = 0.009319 C = 0.008463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.789022 B = 3003.804490 C = 3307.738465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.037 4.037 3 C 0.099 3.901 4 N -0.269 5.269 5 N -0.464 5.464 6 C 0.268 3.732 7 C -0.626 4.626 8 H 0.040 0.960 9 C -0.026 4.026 10 N -0.922 5.922 11 Si 1.125 2.875 12 H -0.272 1.272 13 H -0.272 1.272 14 H -0.269 1.269 15 C 0.469 3.531 16 O -0.558 6.558 17 C -0.131 4.131 18 H 0.164 0.836 19 C -0.115 4.115 20 H 0.036 0.964 21 H 0.092 0.908 22 H 0.041 0.959 23 H 0.125 0.875 24 H 0.129 0.871 25 H 0.009 0.991 26 H 0.023 0.977 27 H 0.256 0.744 28 H 0.035 0.965 29 H 0.070 0.930 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.915 -19.272 -0.013 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.076 4.076 3 C -0.094 4.094 4 N -0.076 5.076 5 N -0.280 5.280 6 C 0.148 3.852 7 C -0.664 4.664 8 H 0.059 0.941 9 C -0.224 4.224 10 N -0.558 5.558 11 Si 0.945 3.055 12 H -0.198 1.198 13 H -0.197 1.197 14 H -0.193 1.193 15 C 0.258 3.742 16 O -0.436 6.436 17 C -0.154 4.154 18 H 0.181 0.819 19 C -0.173 4.173 20 H 0.056 0.944 21 H 0.111 0.889 22 H 0.060 0.940 23 H 0.143 0.857 24 H 0.147 0.853 25 H 0.027 0.973 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.895 -16.975 -0.899 17.104 hybrid contribution 1.231 -0.495 1.326 1.876 sum 3.126 -17.470 0.427 17.753 Atomic orbital electron populations 1.21670 0.94764 1.02900 1.01385 1.20465 0.96284 0.83941 1.06863 1.26374 0.91140 0.97022 0.94840 1.74637 1.24910 0.92503 1.15508 1.50072 1.04975 1.05533 1.67450 1.18915 0.92905 0.75833 0.97529 1.22435 1.47559 1.04428 0.92008 0.94127 1.27526 0.92089 0.92839 1.09984 1.70903 1.45966 1.38859 1.00027 0.82854 0.77865 0.76198 0.68621 1.19789 1.19653 1.19350 1.22408 0.82688 0.93491 0.75638 1.90646 1.42895 1.57732 1.52335 1.21888 0.97519 0.89835 1.06193 0.81860 1.21518 0.99619 1.04295 0.91872 0.94440 0.88907 0.93954 0.85732 0.85283 0.97272 0.95882 0.93434 0.94554 0.91085 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.42 71.98 0.68 -2.10 16 2 C -0.04 -0.56 6.54 29.85 0.20 -0.37 16 3 C 0.10 2.79 6.62 46.83 0.31 3.10 16 4 N -0.27 -11.08 11.33 -40.84 -0.46 -11.55 16 5 N -0.46 -23.30 3.52 -465.39 -1.64 -24.94 16 6 C 0.27 15.83 5.30 85.64 0.45 16.29 16 7 C -0.63 -39.07 9.39 25.60 0.24 -38.83 16 8 H 0.04 2.57 7.81 -2.91 -0.02 2.55 16 9 C -0.03 -1.55 5.46 84.65 0.46 -1.09 16 10 N -0.92 -58.65 13.65 21.45 0.29 -58.36 16 11 Si 1.13 52.77 29.90 68.60 2.05 54.82 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 C 0.47 21.67 7.75 87.94 0.68 22.35 16 16 O -0.56 -30.12 17.82 -3.08 -0.05 -30.17 16 17 C -0.13 -3.80 3.63 -11.74 -0.04 -3.84 16 18 H 0.16 3.53 8.14 -2.39 -0.02 3.51 16 19 C -0.11 -2.61 9.29 71.98 0.67 -1.94 16 20 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 21 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.01 0.60 7.91 -2.39 -0.02 0.58 16 26 H 0.02 1.39 8.01 -2.38 -0.02 1.37 16 27 H 0.26 16.49 7.22 -92.71 -0.67 15.82 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -82.66 265.18 5.05 -77.61 By element: Atomic # 1 Polarization: -2.19 SS G_CDS: 1.22 Total: -0.97 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 3.65 Total: -6.43 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -1.81 Total: -94.85 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.05 Total: -30.17 kcal Atomic # 14 Polarization: 52.77 SS G_CDS: 2.05 Total: 54.82 kcal Total: -82.66 5.05 -77.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110454763.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.814 kcal (2) G-P(sol) polarization free energy of solvation -82.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds