Wall clock time and date at job start Sun Mar 29 2020 21:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.39824 * 125.85978 * 124.71488 * 4 3 2 6 6 C 1.35948 * 107.83537 * 179.83132 * 5 4 3 7 7 O 1.35751 * 126.19202 * 180.15630 * 6 5 4 8 8 N 1.35130 * 107.61154 * 0.42768 * 6 5 4 9 9 C 1.46505 * 126.03649 * 179.74704 * 8 6 5 10 10 C 1.50699 * 109.47132 * 270.00266 * 9 8 6 11 11 H 1.07998 * 120.00109 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99866 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99576 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00032 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47021 * 60.00065 * 14 12 10 16 16 H 1.48500 * 109.47169 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47009 * 299.99906 * 14 12 10 18 18 N 1.30827 * 125.85878 * 305.02614 * 4 3 2 19 19 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 20 20 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 23 23 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 26 26 H 1.08004 * 126.08195 * 359.96855 * 5 4 3 27 27 H 0.96703 * 114.00045 * 270.32130 * 7 6 5 28 28 H 1.08999 * 109.46614 * 30.00077 * 9 8 6 29 29 H 1.08998 * 109.46719 * 150.00337 * 9 8 6 30 30 H 0.97002 * 119.99194 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3656 2.0881 -0.9324 6 6 5.6585 1.8517 -0.5850 7 8 6.7595 2.3075 -1.2355 8 7 5.6493 1.0761 0.5214 9 6 6.8281 0.5768 1.2338 10 6 7.2325 -0.7578 0.6624 11 1 6.6677 -1.1909 -0.1498 12 6 8.3236 -1.4258 1.1766 13 7 9.0117 -0.8980 2.1654 14 14 8.8253 -3.0797 0.4679 15 1 9.1468 -2.9236 -0.9734 16 1 10.0209 -3.5852 1.1892 17 1 7.7075 -4.0448 0.6241 18 7 4.3137 0.8339 0.8672 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 4.0304 2.6726 -1.7765 27 1 7.0782 1.7161 -1.9311 28 1 7.6488 1.2849 1.1191 29 1 6.5919 0.4625 2.2917 30 1 9.7795 -1.3678 2.5268 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117300845.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:55 Heat of formation + Delta-G solvation = -10.762065 kcal Electronic energy + Delta-G solvation = -13541.912243 eV Core-core repulsion = 11144.611023 eV Total energy + Delta-G solvation = -2397.301220 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.17324 -38.20050 -36.29852 -35.33545 -33.18151 -30.14192 -29.62221 -27.48935 -24.84060 -22.65575 -22.10014 -20.78354 -19.10413 -18.51474 -17.36092 -16.61852 -16.12846 -15.49495 -15.19559 -15.07647 -14.67178 -14.30523 -13.87734 -13.63921 -13.07237 -12.96070 -12.72696 -12.61317 -12.27813 -12.18226 -12.05603 -11.78725 -11.57475 -11.09334 -10.77658 -9.95619 -9.40888 -8.38413 -6.57315 0.91425 1.35576 1.38250 1.47038 1.68773 1.83967 2.30439 2.92230 3.20181 3.78290 4.06726 4.25792 4.36564 4.66251 4.69611 4.80011 4.84072 4.90382 4.98943 5.03798 5.20101 5.29120 5.44549 5.45288 5.54823 5.73518 5.84131 5.90563 6.47771 6.76573 6.96065 7.15062 8.69254 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.031034 B = 0.008273 C = 0.007174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.024462 B = 3383.627357 C = 3902.223186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.028 4.028 4 C 0.063 3.937 5 C -0.295 4.295 6 C 0.246 3.754 7 O -0.475 6.475 8 N -0.366 5.366 9 C 0.271 3.729 10 C -0.558 4.558 11 H 0.055 0.945 12 C 0.019 3.981 13 N -0.921 5.921 14 Si 0.978 3.022 15 H -0.262 1.262 16 H -0.273 1.273 17 H -0.273 1.273 18 N -0.320 5.320 19 H 0.060 0.940 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.041 0.959 23 H 0.053 0.947 24 H 0.109 0.891 25 H 0.085 0.915 26 H 0.178 0.822 27 H 0.413 0.587 28 H 0.037 0.963 29 H 0.022 0.978 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.391 2.890 -7.728 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.067 4.067 4 C -0.102 4.102 5 C -0.325 4.325 6 C 0.074 3.926 7 O -0.281 6.281 8 N -0.156 5.156 9 C 0.152 3.848 10 C -0.596 4.596 11 H 0.073 0.927 12 C -0.182 4.182 13 N -0.559 5.559 14 Si 0.801 3.199 15 H -0.186 1.186 16 H -0.198 1.198 17 H -0.198 1.198 18 N -0.148 5.148 19 H 0.079 0.921 20 H 0.090 0.910 21 H 0.075 0.925 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.128 0.872 25 H 0.103 0.897 26 H 0.195 0.805 27 H 0.272 0.728 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.031 2.628 -6.185 12.916 hybrid contribution 1.071 -0.659 -0.876 1.533 sum -9.959 1.969 -7.061 12.366 Atomic orbital electron populations 1.21722 0.93286 1.02203 1.02792 1.21437 0.97340 0.95648 1.01240 1.20167 0.83624 0.98306 1.04589 1.22753 0.98222 0.95946 0.93235 1.21306 0.89274 1.14738 1.07206 1.19271 0.88778 0.95079 0.89461 1.84716 1.43429 1.47075 1.52831 1.49726 1.06262 1.37129 1.22449 1.19150 0.78942 0.94770 0.91973 1.21411 1.13841 1.04432 1.19891 0.92672 1.25867 0.95289 1.02226 0.94818 1.70026 1.19405 1.40685 1.25734 0.85309 0.77816 0.77847 0.78939 1.18640 1.19810 1.19775 1.77312 0.86337 1.25096 1.26017 0.92063 0.91039 0.92473 0.93962 0.92859 0.87234 0.89680 0.80481 0.72805 0.94496 0.95974 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.91 71.98 0.71 -1.86 16 2 C -0.12 -3.02 5.89 30.59 0.18 -2.84 16 3 C -0.03 -0.72 5.79 29.85 0.17 -0.55 16 4 C 0.06 2.32 6.49 43.09 0.28 2.60 16 5 C -0.29 -10.50 10.75 22.12 0.24 -10.27 16 6 C 0.25 10.37 7.98 83.65 0.67 11.03 16 7 O -0.47 -17.74 13.57 -90.77 -1.23 -18.97 16 8 N -0.37 -18.08 3.60 -463.49 -1.67 -19.74 16 9 C 0.27 15.05 6.14 85.63 0.53 15.58 16 10 C -0.56 -31.76 9.39 25.60 0.24 -31.52 16 11 H 0.06 3.15 7.81 -2.91 -0.02 3.12 16 12 C 0.02 1.06 5.46 84.66 0.46 1.52 16 13 N -0.92 -53.53 13.29 21.45 0.28 -53.25 16 14 Si 0.98 43.04 29.54 68.60 2.03 45.07 16 15 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 N -0.32 -14.92 12.53 -47.42 -0.59 -15.51 16 19 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 20 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 22 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.11 2.10 8.12 -2.39 -0.02 2.08 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.18 4.84 8.06 -2.91 -0.02 4.81 16 27 H 0.41 11.70 9.06 -74.06 -0.67 11.03 16 28 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -67.46 268.14 2.75 -64.71 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.46 Total: 14.01 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 3.48 Total: -16.31 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -1.98 Total: -88.51 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -1.23 Total: -18.97 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -67.46 2.75 -64.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117300845.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.946 kcal (2) G-P(sol) polarization free energy of solvation -67.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds