Wall clock time and date at job start Sun Mar 29 2020 21:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99819 * 2 1 4 4 H 1.48501 * 109.46828 * 274.11506 * 3 2 1 5 5 H 1.48493 * 109.46977 * 34.12099 * 3 2 1 6 6 H 1.48503 * 109.46710 * 154.12018 * 3 2 1 7 7 C 1.38817 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00022 * 339.30785 * 7 2 1 9 9 N 1.36935 * 119.99689 * 159.30831 * 7 2 1 10 10 C 1.46771 * 119.94322 * 151.63665 * 9 7 2 11 11 C 1.53897 * 109.22572 * 124.62501 * 10 9 7 12 12 N 1.47620 * 106.51210 * 47.22599 * 11 10 9 13 13 C 1.33702 * 127.03748 * 121.08672 * 12 11 10 14 14 O 1.21281 * 125.26752 * 18.47733 * 13 12 11 15 15 C 1.51429 * 109.46006 * 198.44067 * 13 12 11 16 16 C 1.54523 * 104.22321 * 337.06008 * 15 13 12 17 17 C 1.47551 * 121.40348 * 304.74223 * 12 11 10 18 18 H 1.09001 * 110.42638 * 296.00580 * 17 12 11 19 19 C 1.47192 * 119.95270 * 331.63337 * 9 7 2 20 20 H 0.96998 * 120.00120 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.51896 * 4.69706 * 10 9 7 22 22 H 1.09007 * 109.55334 * 244.57236 * 10 9 7 23 23 H 1.08999 * 110.03973 * 287.97514 * 11 10 9 24 24 H 1.09000 * 110.04497 * 166.46994 * 11 10 9 25 25 H 1.09004 * 110.48453 * 218.37590 * 15 13 12 26 26 H 1.09000 * 110.59445 * 95.79987 * 15 13 12 27 27 H 1.09007 * 110.70514 * 262.49524 * 16 15 13 28 28 H 1.09001 * 110.70549 * 139.26182 * 16 15 13 29 29 H 1.09006 * 109.79859 * 116.62173 * 19 9 7 30 30 H 1.09002 * 109.79952 * 355.75766 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4106 2.0966 -1.3965 5 1 1.4939 2.6259 0.7853 6 1 3.5886 1.4166 0.6111 7 6 2.0103 -1.2022 0.0005 8 1 1.5226 -2.1072 0.3314 9 7 3.3134 -1.2406 -0.4185 10 6 4.2268 -2.2551 0.1207 11 6 4.8468 -3.0485 -1.0431 12 7 5.3010 -2.0534 -2.0344 13 6 6.5461 -1.8808 -2.4900 14 8 7.4400 -2.6967 -2.4112 15 6 6.6671 -0.5093 -3.1203 16 6 5.2161 -0.1359 -3.4986 17 6 4.3775 -1.0467 -2.5918 18 1 3.5879 -1.5314 -3.1661 19 6 3.7960 -0.2644 -1.4089 20 1 -0.4850 0.8400 -0.0004 21 1 3.6744 -2.9338 0.7706 22 1 5.0175 -1.7678 0.6912 23 1 4.0989 -3.7047 -1.4882 24 1 5.6943 -3.6340 -0.6865 25 1 7.2942 -0.5527 -4.0108 26 1 7.0711 0.2071 -2.4050 27 1 5.0232 -0.3546 -4.5489 28 1 5.0186 0.9134 -3.2797 29 1 4.5697 0.3614 -0.9639 30 1 2.9675 0.3570 -1.7487 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123464492.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:27 Heat of formation + Delta-G solvation = 1.637083 kcal Electronic energy + Delta-G solvation = -14553.488790 eV Core-core repulsion = 12156.725238 eV Total energy + Delta-G solvation = -2396.763552 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.32096 -37.08947 -34.99654 -33.00193 -31.38035 -29.24868 -27.74266 -24.59333 -23.61342 -21.31120 -20.80638 -18.87970 -16.98643 -16.21083 -15.76919 -15.19333 -14.83865 -14.51740 -13.71130 -13.62498 -13.15235 -12.97095 -12.50410 -12.28788 -12.15350 -11.68925 -11.23987 -11.05751 -10.80610 -10.50450 -10.30114 -10.08956 -9.63727 -9.45029 -8.91763 -8.31918 -7.05223 -6.06051 -3.44143 2.84505 3.19846 3.35614 3.41008 3.43097 4.40789 4.55598 4.63069 4.95207 4.99793 5.24671 5.31951 5.54674 5.65074 5.70347 5.79104 5.82818 5.92363 5.99754 6.12698 6.20688 6.35352 6.44622 6.61885 6.91849 7.58245 7.83321 8.21539 8.48811 8.80659 9.58999 9.93633 11.09468 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.043559 B = 0.011995 C = 0.010354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.650266 B = 2333.833416 C = 2703.625415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.026 3.974 3 Si 0.880 3.120 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.268 4.268 8 H 0.087 0.913 9 N -0.605 5.605 10 C 0.135 3.865 11 C 0.109 3.891 12 N -0.607 5.607 13 C 0.517 3.483 14 O -0.551 6.551 15 C -0.154 4.154 16 C -0.128 4.128 17 C 0.109 3.891 18 H 0.088 0.912 19 C 0.121 3.879 20 H 0.264 0.736 21 H 0.077 0.923 22 H 0.028 0.972 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.034 0.966 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.030 0.446 -5.434 10.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.174 4.174 3 Si 0.710 3.290 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.396 4.396 8 H 0.105 0.895 9 N -0.328 5.328 10 C 0.008 3.992 11 C -0.014 4.014 12 N -0.340 5.340 13 C 0.305 3.695 14 O -0.431 6.431 15 C -0.194 4.194 16 C -0.167 4.167 17 C 0.003 3.997 18 H 0.106 0.894 19 C -0.005 4.005 20 H 0.074 0.926 21 H 0.096 0.904 22 H 0.046 0.954 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.292 0.012 -5.300 10.697 hybrid contribution 0.275 1.061 0.057 1.098 sum 9.567 1.073 -5.243 10.962 Atomic orbital electron populations 1.69835 1.05735 1.26718 1.52285 1.25314 0.95233 0.97605 0.99198 0.86987 0.80230 0.84695 0.77103 1.21391 1.22888 1.19549 1.18956 0.84892 0.94922 1.40813 0.89520 1.44287 1.08756 1.34726 1.45052 1.21389 0.93034 0.91769 0.93010 1.22466 0.98964 0.90480 0.89508 1.48554 1.09179 1.32924 1.43316 1.20662 0.81911 0.88561 0.78386 1.90665 1.43636 1.48954 1.59798 1.22344 0.98516 0.95926 1.02617 1.22363 0.93506 1.00863 0.99935 1.22453 0.92026 0.89685 0.95488 0.89357 1.21840 0.97918 0.92049 0.88705 0.92603 0.90447 0.95445 0.91072 0.90083 0.88676 0.88151 0.90049 0.89373 0.94822 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.97 55.49 0.78 -25.93 16 2 C 0.03 0.72 5.21 -17.43 -0.09 0.63 16 3 Si 0.88 21.23 24.37 -169.99 -4.14 17.09 16 4 H -0.29 -6.49 6.66 56.52 0.38 -6.11 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.27 -6.48 6.66 56.52 0.38 -6.10 16 7 C -0.27 -7.16 9.96 -15.06 -0.15 -7.31 16 8 H 0.09 2.48 8.05 -52.49 -0.42 2.05 16 9 N -0.61 -13.77 2.71 -171.74 -0.47 -14.24 16 10 C 0.13 2.59 6.64 -3.43 -0.02 2.56 16 11 C 0.11 1.87 7.10 -2.96 -0.02 1.85 16 12 N -0.61 -10.67 2.92 -163.44 -0.48 -11.14 16 13 C 0.52 9.00 8.03 -11.11 -0.09 8.91 16 14 O -0.55 -11.29 17.76 5.56 0.10 -11.19 16 15 C -0.15 -2.02 6.91 -26.73 -0.18 -2.21 16 16 C -0.13 -1.65 6.68 -25.69 -0.17 -1.82 16 17 C 0.11 1.84 3.78 -66.98 -0.25 1.59 16 18 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 19 C 0.12 2.47 3.59 -3.52 -0.01 2.46 16 20 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 21 H 0.08 1.43 7.89 -51.93 -0.41 1.02 16 22 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 23 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.08 1.31 7.94 -51.93 -0.41 0.89 16 25 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 1.05 7.81 -51.93 -0.41 0.64 16 29 H 0.03 0.68 7.19 -51.93 -0.37 0.31 16 30 H 0.08 1.83 4.40 -51.93 -0.23 1.60 16 LS Contribution 240.50 15.07 3.62 3.62 Total: -1.00 -31.37 240.50 -5.56 -36.93 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -3.97 Total: -1.81 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -1.00 Total: 6.66 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.17 Total: -51.31 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.10 Total: -11.19 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.14 Total: 17.09 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.37 -5.56 -36.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123464492.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.567 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds