Wall clock time and date at job start Sun Mar 29 2020 21:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99819 * 2 1 4 4 H 1.48501 * 109.46828 * 274.11506 * 3 2 1 5 5 H 1.48493 * 109.46977 * 34.12099 * 3 2 1 6 6 H 1.48503 * 109.46710 * 154.12018 * 3 2 1 7 7 C 1.38817 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00022 * 339.30785 * 7 2 1 9 9 N 1.36935 * 119.99689 * 159.30831 * 7 2 1 10 10 C 1.46771 * 119.94322 * 151.63665 * 9 7 2 11 11 C 1.53897 * 109.22572 * 124.62501 * 10 9 7 12 12 N 1.47620 * 106.51210 * 47.22599 * 11 10 9 13 13 C 1.33702 * 127.03748 * 121.08672 * 12 11 10 14 14 O 1.21281 * 125.26752 * 18.47733 * 13 12 11 15 15 C 1.51429 * 109.46006 * 198.44067 * 13 12 11 16 16 C 1.54523 * 104.22321 * 337.06008 * 15 13 12 17 17 C 1.47551 * 121.40348 * 304.74223 * 12 11 10 18 18 H 1.09001 * 110.42638 * 296.00580 * 17 12 11 19 19 C 1.47192 * 119.95270 * 331.63337 * 9 7 2 20 20 H 0.96998 * 120.00120 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.51896 * 4.69706 * 10 9 7 22 22 H 1.09007 * 109.55334 * 244.57236 * 10 9 7 23 23 H 1.08999 * 110.03973 * 287.97514 * 11 10 9 24 24 H 1.09000 * 110.04497 * 166.46994 * 11 10 9 25 25 H 1.09004 * 110.48453 * 218.37590 * 15 13 12 26 26 H 1.09000 * 110.59445 * 95.79987 * 15 13 12 27 27 H 1.09007 * 110.70514 * 262.49524 * 16 15 13 28 28 H 1.09001 * 110.70549 * 139.26182 * 16 15 13 29 29 H 1.09006 * 109.79859 * 116.62173 * 19 9 7 30 30 H 1.09002 * 109.79952 * 355.75766 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4106 2.0966 -1.3965 5 1 1.4939 2.6259 0.7853 6 1 3.5886 1.4166 0.6111 7 6 2.0103 -1.2022 0.0005 8 1 1.5226 -2.1072 0.3314 9 7 3.3134 -1.2406 -0.4185 10 6 4.2268 -2.2551 0.1207 11 6 4.8468 -3.0485 -1.0431 12 7 5.3010 -2.0534 -2.0344 13 6 6.5461 -1.8808 -2.4900 14 8 7.4400 -2.6967 -2.4112 15 6 6.6671 -0.5093 -3.1203 16 6 5.2161 -0.1359 -3.4986 17 6 4.3775 -1.0467 -2.5918 18 1 3.5879 -1.5314 -3.1661 19 6 3.7960 -0.2644 -1.4089 20 1 -0.4850 0.8400 -0.0004 21 1 3.6744 -2.9338 0.7706 22 1 5.0175 -1.7678 0.6912 23 1 4.0989 -3.7047 -1.4882 24 1 5.6943 -3.6340 -0.6865 25 1 7.2942 -0.5527 -4.0108 26 1 7.0711 0.2071 -2.4050 27 1 5.0232 -0.3546 -4.5489 28 1 5.0186 0.9134 -3.2797 29 1 4.5697 0.3614 -0.9639 30 1 2.9675 0.3570 -1.7487 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123464492.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:26 Heat of formation + Delta-G solvation = -20.467371 kcal Electronic energy + Delta-G solvation = -14554.447311 eV Core-core repulsion = 12156.725238 eV Total energy + Delta-G solvation = -2397.722073 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.66559 -38.63166 -36.54285 -34.55660 -33.24635 -30.58509 -29.32036 -26.21290 -25.16876 -22.82293 -22.17090 -20.35296 -18.81854 -17.68744 -17.17953 -16.64661 -16.46585 -16.11528 -15.26513 -15.05202 -14.80109 -14.41512 -14.03483 -13.93059 -13.56406 -13.03352 -12.84796 -12.51957 -12.26729 -12.13142 -11.75224 -11.72736 -11.58163 -10.93461 -10.74672 -9.90525 -8.87805 -8.17776 -5.53063 1.29301 1.44631 1.51929 1.53420 2.03935 2.40477 3.00416 3.23906 3.42702 3.72404 3.88575 4.09808 4.20215 4.28072 4.31514 4.43124 4.56202 4.63180 4.74912 4.84039 4.93192 5.06810 5.07807 5.17216 5.53193 5.83404 6.09514 6.27440 6.86222 7.14570 7.56536 7.94463 9.01559 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.043559 B = 0.011995 C = 0.010354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.650266 B = 2333.833416 C = 2703.625415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.031 4.031 3 Si 0.945 3.055 4 H -0.258 1.258 5 H -0.313 1.313 6 H -0.265 1.265 7 C -0.258 4.258 8 H 0.052 0.948 9 N -0.620 5.620 10 C 0.134 3.866 11 C 0.114 3.886 12 N -0.614 5.614 13 C 0.509 3.491 14 O -0.587 6.587 15 C -0.143 4.143 16 C -0.117 4.117 17 C 0.112 3.888 18 H 0.082 0.918 19 C 0.116 3.884 20 H 0.263 0.737 21 H 0.075 0.925 22 H 0.032 0.968 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.043 0.957 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.081 1.790 -6.860 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.226 4.226 3 Si 0.773 3.227 4 H -0.184 1.184 5 H -0.242 1.242 6 H -0.190 1.190 7 C -0.387 4.387 8 H 0.070 0.930 9 N -0.344 5.344 10 C 0.008 3.992 11 C -0.008 4.008 12 N -0.347 5.347 13 C 0.299 3.701 14 O -0.469 6.469 15 C -0.183 4.183 16 C -0.155 4.155 17 C 0.007 3.993 18 H 0.100 0.900 19 C -0.009 4.009 20 H 0.072 0.928 21 H 0.094 0.906 22 H 0.050 0.950 23 H 0.089 0.911 24 H 0.110 0.890 25 H 0.139 0.861 26 H 0.134 0.866 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.061 0.939 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.383 1.354 -6.755 13.305 hybrid contribution -0.372 0.513 0.540 0.833 sum 11.011 1.867 -6.215 12.781 Atomic orbital electron populations 1.69970 1.07519 1.27441 1.54918 1.25948 0.95818 1.01092 0.99773 0.85935 0.78539 0.79925 0.78331 1.18389 1.24200 1.18990 1.18862 0.86549 0.93745 1.39589 0.93016 1.44414 1.07855 1.35905 1.46217 1.21463 0.92529 0.91252 0.93910 1.22321 0.99228 0.90360 0.88935 1.48719 1.09768 1.32929 1.43248 1.21435 0.81020 0.89776 0.77831 1.90648 1.44510 1.50518 1.61199 1.22391 0.99214 0.92961 1.03691 1.22420 0.92052 1.00709 1.00363 1.22398 0.92537 0.89781 0.94604 0.90023 1.21919 0.97601 0.91950 0.89446 0.92780 0.90619 0.94968 0.91104 0.88956 0.86091 0.86618 0.87420 0.87626 0.93936 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.73 13.97 21.65 0.30 -57.43 16 2 C -0.03 -1.73 5.21 84.86 0.44 -1.29 16 3 Si 0.94 43.42 24.37 68.60 1.67 45.09 16 4 H -0.26 -10.60 6.66 99.48 0.66 -9.94 16 5 H -0.31 -14.92 7.11 99.48 0.71 -14.22 16 6 H -0.27 -11.82 6.66 99.48 0.66 -11.16 16 7 C -0.26 -14.03 9.96 84.03 0.84 -13.20 16 8 H 0.05 3.10 8.05 -2.91 -0.02 3.08 16 9 N -0.62 -27.78 2.71 -697.25 -1.89 -29.67 16 10 C 0.13 5.07 6.64 86.63 0.58 5.64 16 11 C 0.11 3.80 7.10 86.47 0.61 4.42 16 12 N -0.61 -20.17 2.92 -790.00 -2.30 -22.47 16 13 C 0.51 16.24 8.03 88.06 0.71 16.95 16 14 O -0.59 -22.84 17.76 -3.03 -0.05 -22.89 16 15 C -0.14 -3.08 6.91 30.60 0.21 -2.87 16 16 C -0.12 -2.45 6.68 31.27 0.21 -2.24 16 17 C 0.11 3.46 3.78 45.04 0.17 3.63 16 18 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 19 C 0.12 4.46 3.59 86.34 0.31 4.77 16 20 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 21 H 0.08 2.82 7.89 -2.39 -0.02 2.80 16 22 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.09 2.86 7.94 -2.39 -0.02 2.84 16 25 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.11 1.92 7.81 -2.39 -0.02 1.90 16 29 H 0.04 1.57 7.19 -2.38 -0.02 1.55 16 30 H 0.07 2.85 4.40 -2.39 -0.01 2.84 16 Total: -1.00 -68.25 240.50 2.84 -65.41 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.04 Total: 6.14 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 4.08 Total: 15.81 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -3.89 Total: -109.56 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.67 Total: 45.09 kcal Total: -68.25 2.84 -65.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123464492.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.945 kcal (2) G-P(sol) polarization free energy of solvation -68.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds