Wall clock time and date at job start Sun Mar 29 2020 21:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99931 * 2 1 4 4 H 1.48496 * 109.46953 * 269.99827 * 3 2 1 5 5 H 1.48503 * 109.47073 * 29.99794 * 3 2 1 6 6 H 1.48495 * 109.46998 * 149.99570 * 3 2 1 7 7 C 1.37877 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99919 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99896 * 180.02562 * 7 2 1 10 10 C 1.50705 * 109.47199 * 180.02562 * 9 7 2 11 11 C 1.38289 * 119.92116 * 270.02807 * 10 9 7 12 12 C 1.38121 * 120.09335 * 179.97438 * 11 10 9 13 13 C 1.38882 * 119.93600 * 359.78277 * 12 11 10 14 14 N 1.39753 * 120.08150 * 180.23402 * 13 12 11 15 15 C 1.38991 * 119.84778 * 0.46709 * 13 12 11 16 16 Cl 1.73599 * 120.05258 * 179.79343 * 15 13 12 17 17 C 1.38220 * 119.90152 * 359.51098 * 15 13 12 18 18 H 0.97003 * 120.00159 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.47258 * 60.00449 * 9 7 2 20 20 H 1.08999 * 109.47137 * 300.00395 * 9 7 2 21 21 H 1.07997 * 119.95753 * 359.97397 * 11 10 9 22 22 H 1.07993 * 120.03321 * 180.02562 * 12 11 10 23 23 H 0.96998 * 120.00637 * 180.23123 * 14 13 12 24 24 H 0.97001 * 119.99496 * 0.23787 * 14 13 12 25 25 H 1.07993 * 119.96966 * 180.23233 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0139 -2.6149 0.0010 11 6 4.2428 -3.2657 1.1995 12 6 4.7028 -4.5680 1.2035 13 6 4.9312 -5.2261 0.0021 14 7 5.3919 -6.5455 0.0026 15 6 4.7053 -4.5678 -1.2011 16 17 4.9942 -5.3835 -2.7060 17 6 4.2445 -3.2647 -1.1976 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6800 0.8912 20 1 3.8751 -0.6803 -0.8888 21 1 4.0618 -2.7549 2.1337 22 1 4.8808 -5.0755 2.1401 23 1 5.5543 -7.0029 -0.8372 24 1 5.5492 -7.0039 0.8429 25 1 4.0650 -2.7534 -2.1317 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149926717.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:44 Heat of formation + Delta-G solvation = 4.359003 kcal Electronic energy + Delta-G solvation = -11295.993385 eV Core-core repulsion = 9106.505272 eV Total energy + Delta-G solvation = -2189.488113 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.02774 -36.10799 -34.80283 -32.69841 -30.31875 -30.14767 -26.54887 -22.70614 -22.38362 -20.26519 -16.85883 -16.74517 -16.69453 -15.25133 -14.18208 -14.02926 -13.45893 -13.30820 -13.18970 -12.46057 -11.84903 -11.59024 -11.28373 -10.91422 -10.78519 -10.51548 -10.35563 -9.96664 -9.62956 -9.25136 -8.56221 -8.30602 -6.99276 -6.05076 -4.04000 1.75950 2.07618 2.56004 3.30540 3.38260 3.40866 4.05943 4.30746 4.43513 5.21133 5.28780 5.63303 5.82991 5.98400 6.10255 6.34261 6.55745 6.85848 6.95117 7.01912 7.29754 7.56218 7.67021 7.73609 7.90854 8.52588 9.00972 9.55419 11.07958 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.046058 B = 0.007988 C = 0.007457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.784253 B = 3504.437373 C = 3754.187519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.021 3.979 10 C -0.072 4.072 11 C -0.068 4.068 12 C -0.187 4.187 13 C 0.200 3.800 14 N -0.882 5.882 15 C -0.109 4.109 16 Cl -0.093 7.093 17 C -0.066 4.066 18 H 0.264 0.736 19 H 0.028 0.972 20 H 0.023 0.977 21 H 0.125 0.875 22 H 0.121 0.879 23 H 0.395 0.605 24 H 0.395 0.605 25 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.298 -9.566 -0.125 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.017 4.017 10 C -0.074 4.074 11 C -0.087 4.087 12 C -0.210 4.210 13 C 0.096 3.904 14 N -0.424 5.424 15 C -0.140 4.140 16 Cl -0.065 7.065 17 C -0.085 4.085 18 H 0.074 0.926 19 H 0.046 0.954 20 H 0.041 0.959 21 H 0.143 0.857 22 H 0.139 0.861 23 H 0.224 0.776 24 H 0.223 0.777 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.142 -9.466 -0.262 14.623 hybrid contribution 0.361 0.403 -0.174 0.568 sum 11.503 -9.063 -0.436 14.651 Atomic orbital electron populations 1.69905 1.06282 1.26928 1.50832 1.25005 0.94720 0.99012 0.94545 0.86812 0.80400 0.83699 0.78645 1.20177 1.21326 1.18885 1.20991 0.88435 0.94631 1.51050 0.90812 1.18722 0.97304 0.88314 0.97321 1.20022 0.97480 0.98618 0.91265 1.20943 0.95925 0.93368 0.98466 1.20453 1.09188 0.96268 0.95104 1.17329 0.95453 0.85409 0.92205 1.42390 1.77368 1.12021 1.10571 1.20303 1.14319 0.95078 0.84269 1.98287 1.95366 1.79601 1.33253 1.20775 0.96872 0.91604 0.99296 0.92646 0.95374 0.95928 0.85692 0.86140 0.77560 0.77706 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.96 55.43 0.77 -26.82 15 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 15 3 Si 0.88 21.26 27.47 -169.99 -4.67 16.60 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.26 -6.10 6.54 56.52 0.37 -5.73 15 7 C -0.51 -14.48 9.65 -34.44 -0.33 -14.81 15 8 H 0.07 2.29 7.98 -52.48 -0.42 1.87 15 9 C 0.02 0.49 4.17 -29.04 -0.12 0.36 15 10 C -0.07 -1.49 5.07 -104.59 -0.53 -2.02 15 11 C -0.07 -1.25 9.69 -39.61 -0.38 -1.64 15 12 C -0.19 -2.96 9.90 -39.39 -0.39 -3.35 15 13 C 0.20 3.13 6.75 -83.73 -0.57 2.56 15 14 N -0.88 -10.48 9.05 32.44 0.29 -10.19 15 15 C -0.11 -1.87 6.34 -39.31 -0.25 -2.12 15 16 Cl -0.09 -1.39 27.60 -51.86 -1.43 -2.82 15 17 C -0.07 -1.29 9.48 -39.57 -0.37 -1.66 15 18 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 19 H 0.03 0.65 7.14 -51.93 -0.37 0.28 15 20 H 0.02 0.52 7.51 -51.93 -0.39 0.13 15 21 H 0.13 2.15 8.06 -52.49 -0.42 1.73 15 22 H 0.12 1.54 8.06 -52.49 -0.42 1.12 15 23 H 0.40 4.37 7.51 -40.82 -0.31 4.07 15 24 H 0.40 3.66 8.84 -40.82 -0.36 3.30 15 25 H 0.13 2.45 8.06 -52.49 -0.42 2.03 15 LS Contribution 236.80 15.07 3.57 3.57 Total: -1.00 -30.37 236.80 -6.79 -37.17 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -2.28 Total: 3.30 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -3.04 Total: -20.80 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 1.07 Total: -37.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.43 Total: -2.82 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.37 -6.79 -37.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149926717.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.524 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds