Wall clock time and date at job start Sun Mar 29 2020 22:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30495 * 125.65226 * 2 1 4 4 C 1.34129 * 109.25876 * 179.97438 * 3 2 1 5 5 C 1.34665 * 108.01771 * 359.72480 * 4 3 2 6 6 N 1.48038 * 126.59210 * 180.26726 * 5 4 3 7 7 O 1.21799 * 120.00602 * 180.19270 * 6 5 4 8 8 O 1.21808 * 119.99760 * 0.18721 * 6 5 4 9 9 N 1.35051 * 125.65044 * 179.97438 * 2 1 3 10 10 C 1.46496 * 126.39643 * 0.02562 * 9 2 1 11 11 C 1.50706 * 109.47106 * 89.99771 * 10 9 2 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47288 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46819 * 299.99648 * 15 13 11 19 19 H 1.09008 * 109.47438 * 270.00727 * 1 2 3 20 20 H 1.09002 * 109.47076 * 30.00751 * 1 2 3 21 21 H 1.08998 * 109.47233 * 150.00962 * 1 2 3 22 22 H 1.07997 * 125.99027 * 179.97438 * 4 3 2 23 23 H 1.09001 * 109.47001 * 330.00061 * 10 9 2 24 24 H 1.09000 * 109.47574 * 210.00277 * 10 9 2 25 25 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 0.0006 5 6 3.5925 -0.6643 0.0071 6 7 4.8056 -1.5127 0.0156 7 8 4.7003 -2.7261 0.0174 8 8 5.9092 -0.9972 0.0206 9 7 2.2941 -1.0974 0.0005 10 6 1.8425 -2.4910 0.0006 11 6 1.6881 -2.9692 -1.4203 12 1 1.9051 -2.3017 -2.2411 13 6 1.2699 -4.2585 -1.6721 14 7 1.0052 -5.0711 -0.6724 15 14 1.0792 -4.8514 -3.4333 16 1 2.3859 -4.7551 -4.1322 17 1 0.6214 -6.2640 -3.4332 18 1 0.0793 -4.0064 -4.1344 19 1 -0.3634 0.0001 1.0277 20 1 -0.3633 0.8899 -0.5140 21 1 -0.3633 -0.8900 -0.5137 22 1 4.4098 1.3410 0.0003 23 1 0.8837 -2.5622 0.5141 24 1 2.5769 -3.1110 0.5148 25 1 0.7113 -5.9784 -0.8497 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196566224.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:10 Heat of formation + Delta-G solvation = 32.978177 kcal Electronic energy + Delta-G solvation = -13949.981010 eV Core-core repulsion = 11353.317504 eV Total energy + Delta-G solvation = -2596.663506 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 211.074 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.94621 -42.71030 -37.74042 -36.18019 -34.25234 -33.29261 -29.94264 -29.24384 -26.36108 -25.44007 -22.86665 -21.53062 -19.89270 -19.49695 -19.12130 -18.55579 -17.43340 -16.66050 -16.40094 -15.23086 -14.56104 -14.52651 -14.09281 -13.65071 -13.30511 -13.16772 -12.85519 -12.74822 -12.46305 -12.32574 -12.22432 -12.10911 -11.61496 -10.94596 -10.78375 -10.07392 -8.43023 -6.59499 -0.96483 0.06760 0.80922 1.34046 1.37185 1.44315 1.57123 1.69552 2.28642 2.91624 3.15621 3.52477 3.85048 4.13044 4.57070 4.64806 4.66245 4.83265 4.98571 5.13975 5.30534 5.40375 5.65621 5.79067 6.35562 6.45778 6.61432 7.11874 8.66062 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.028361 B = 0.012483 C = 0.009815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.022470 B = 2242.503051 C = 2851.992629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.272 3.728 3 N -0.498 5.498 4 C 0.106 3.894 5 C -0.034 4.034 6 N 0.071 4.929 7 O -0.223 6.223 8 O -0.127 6.127 9 N -0.418 5.418 10 C 0.235 3.765 11 C -0.557 4.557 12 H 0.049 0.951 13 C 0.031 3.969 14 N -0.910 5.910 15 Si 0.967 3.033 16 H -0.281 1.281 17 H -0.272 1.272 18 H -0.260 1.260 19 H 0.111 0.889 20 H 0.120 0.880 21 H 0.083 0.917 22 H 0.230 0.770 23 H 0.061 0.939 24 H 0.042 0.958 25 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.295 8.817 0.831 8.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.009 3.991 3 N -0.219 5.219 4 C -0.054 4.054 5 C -0.232 4.232 6 N 0.584 4.416 7 O -0.421 6.421 8 O -0.349 6.349 9 N -0.099 5.099 10 C 0.116 3.884 11 C -0.595 4.595 12 H 0.068 0.932 13 C -0.172 4.172 14 N -0.547 5.547 15 Si 0.791 3.209 16 H -0.206 1.206 17 H -0.196 1.196 18 H -0.184 1.184 19 H 0.129 0.871 20 H 0.139 0.861 21 H 0.102 0.898 22 H 0.246 0.754 23 H 0.079 0.921 24 H 0.060 0.940 25 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.322 9.438 0.892 9.760 hybrid contribution 0.861 -1.886 -0.701 2.189 sum -1.461 7.551 0.191 7.694 Atomic orbital electron populations 1.20613 0.80671 1.06014 1.05863 1.24457 0.97863 0.79729 0.97031 1.70709 1.00347 1.27576 1.23291 1.23015 0.97333 0.88289 0.96763 1.21981 0.80567 0.91336 1.29325 1.42464 1.01163 1.00888 0.97125 1.94690 1.93684 0.96198 1.57497 1.94415 1.11194 1.77117 1.52213 1.45914 1.03296 1.11592 1.49074 1.19837 0.96983 0.72363 0.99189 1.21139 1.48890 0.98724 0.90754 0.93234 1.25650 0.93649 0.95820 1.02077 1.69976 1.44049 1.07598 1.33060 0.85466 0.78637 0.78049 0.78753 1.20619 1.19625 1.18427 0.87088 0.86118 0.89839 0.75409 0.92103 0.94032 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.91 9.97 71.23 0.71 -1.20 15 2 C 0.27 9.59 7.90 138.13 1.09 10.69 15 3 N -0.50 -16.84 11.25 -188.14 -2.12 -18.95 15 4 C 0.11 3.52 11.57 83.52 0.97 4.49 15 5 C -0.03 -1.38 7.96 127.31 1.01 -0.37 15 6 N 0.07 3.15 4.46 -49.19 -0.22 2.93 15 7 O -0.22 -11.30 16.96 18.89 0.32 -10.98 15 8 O -0.13 -4.99 19.04 18.88 0.36 -4.63 15 9 N -0.42 -17.83 2.73 -507.02 -1.39 -19.22 15 10 C 0.24 11.56 5.00 85.64 0.43 11.99 15 11 C -0.56 -29.66 9.39 25.60 0.24 -29.42 15 12 H 0.05 2.70 7.81 -2.91 -0.02 2.67 15 13 C 0.03 1.62 5.46 84.65 0.46 2.09 15 14 N -0.91 -50.12 13.29 21.45 0.28 -49.84 15 15 Si 0.97 41.98 29.54 68.60 2.03 44.01 15 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 15 18 H -0.26 -10.64 7.11 99.48 0.71 -9.93 15 19 H 0.11 2.33 8.14 -2.38 -0.02 2.31 15 20 H 0.12 2.46 8.14 -2.39 -0.02 2.44 15 21 H 0.08 2.42 7.70 -2.39 -0.02 2.41 15 22 H 0.23 5.56 8.06 -2.91 -0.02 5.54 15 23 H 0.06 2.91 7.66 -2.39 -0.02 2.89 15 24 H 0.04 2.30 6.42 -2.39 -0.02 2.29 15 25 H 0.28 14.25 8.31 -92.71 -0.77 13.48 15 Total: -1.00 -62.07 238.09 5.40 -56.68 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: 1.21 Total: 1.76 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 4.91 Total: -1.74 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -3.44 Total: -85.08 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.68 Total: -15.62 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -62.07 5.40 -56.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196566224.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.655 kcal (2) G-P(sol) polarization free energy of solvation -62.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds