Wall clock time and date at job start Sun Mar 29 2020 21:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00075 * 2 1 4 4 H 1.48500 * 109.47201 * 269.99751 * 3 2 1 5 5 H 1.48502 * 109.47286 * 30.00078 * 3 2 1 6 6 H 1.48503 * 109.47038 * 149.99769 * 3 2 1 7 7 C 1.37875 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00154 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.38014 * 120.00351 * 179.97438 * 10 9 7 12 12 N 1.32939 * 119.99882 * 0.20951 * 11 10 9 13 13 C 1.32928 * 119.99815 * 180.29672 * 12 11 10 14 14 N 1.38010 * 120.00269 * 179.74830 * 13 12 11 15 15 N 1.32945 * 119.99995 * 359.47242 * 13 12 11 16 16 C 1.32933 * 119.99739 * 0.27376 * 15 13 12 17 17 N 1.38013 * 119.99403 * 179.97438 * 16 15 13 18 18 N 1.32931 * 119.99960 * 179.97438 * 11 10 9 19 19 H 0.97005 * 120.00006 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47368 * 59.99995 * 9 7 2 21 21 H 1.09007 * 109.47320 * 299.99874 * 9 7 2 22 22 H 0.97003 * 120.00100 * 359.97438 * 10 9 7 23 23 H 0.97001 * 120.00572 * 179.73121 * 14 13 12 24 24 H 0.97005 * 119.99702 * 359.44726 * 14 13 12 25 25 H 0.96991 * 120.00661 * 359.97438 * 17 16 15 26 26 H 0.97009 * 119.99493 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7428 -4.9139 0.0000 12 7 0.4358 -5.1568 -0.0037 13 6 -0.0073 -6.4100 0.0028 14 7 -1.3641 -6.6622 0.0042 15 7 0.8566 -7.4205 0.0024 16 6 2.1635 -7.1776 0.0009 17 7 3.0603 -8.2267 0.0010 18 7 2.6067 -5.9243 -0.0005 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 3.1566 -3.4355 -0.0009 23 1 -1.6875 -7.5768 0.0050 24 1 -1.9945 -5.9249 0.0086 25 1 2.7370 -9.1411 0.0025 26 1 4.0141 -8.0494 0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000199182725.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:38 Heat of formation + Delta-G solvation = 71.350769 kcal Electronic energy + Delta-G solvation = -13174.956374 eV Core-core repulsion = 10709.968241 eV Total energy + Delta-G solvation = -2464.988132 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.092 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.62819 -36.08609 -35.75472 -33.52147 -32.24775 -30.93292 -30.65297 -27.04382 -23.38639 -22.98320 -21.66318 -18.90201 -18.00715 -16.76890 -16.07511 -15.57879 -15.18788 -14.80806 -14.72700 -14.55200 -13.30923 -13.13376 -12.84820 -12.03681 -12.00209 -11.15140 -10.91893 -10.70092 -10.24149 -9.38679 -8.88773 -8.85481 -8.68679 -8.59630 -8.32566 -7.46229 -6.16151 -4.22080 2.10258 2.19102 3.15026 3.26145 3.32267 3.35394 3.79146 3.95488 4.36516 4.78868 5.20610 5.27721 5.32761 6.31220 7.00406 7.01957 7.24643 7.34547 7.52617 7.54411 7.61646 7.70256 7.96555 8.15890 8.33362 8.61489 8.85774 9.38422 9.47114 10.93942 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.052347 B = 0.007015 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.760534 B = 3990.336532 C = 4509.950983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.263 3.737 10 N -0.661 5.661 11 C 0.645 3.355 12 N -0.665 5.665 13 C 0.646 3.354 14 N -0.815 5.815 15 N -0.697 5.697 16 C 0.646 3.354 17 N -0.818 5.818 18 N -0.690 5.690 19 H 0.265 0.735 20 H 0.030 0.970 21 H 0.030 0.970 22 H 0.407 0.593 23 H 0.410 0.590 24 H 0.415 0.585 25 H 0.410 0.590 26 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 -12.843 0.033 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.142 3.858 10 N -0.293 5.293 11 C 0.279 3.721 12 N -0.410 5.410 13 C 0.278 3.722 14 N -0.365 5.365 15 N -0.445 5.445 16 C 0.277 3.723 17 N -0.369 5.369 18 N -0.436 5.436 19 H 0.075 0.925 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.243 0.757 23 H 0.240 0.760 24 H 0.247 0.753 25 H 0.240 0.760 26 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.139 -12.387 0.027 12.440 hybrid contribution 0.602 0.579 -0.003 0.836 sum 1.741 -11.808 0.024 11.936 Atomic orbital electron populations 1.69971 1.06042 1.27256 1.49007 1.24905 0.94924 0.99335 0.94678 0.86404 0.79668 0.82561 0.78225 1.20468 1.21019 1.19720 1.21241 0.93445 0.90384 1.53161 0.91818 1.19172 0.87780 0.80758 0.98046 1.45071 1.10935 1.00589 1.72725 1.18900 0.83450 0.86824 0.82897 1.68137 1.15815 1.20874 1.36207 1.18680 0.86761 0.83869 0.82887 1.41549 1.01525 1.11640 1.81824 1.67812 1.01916 1.35820 1.38950 1.18585 0.84890 0.85653 0.83147 1.41503 1.07412 1.05552 1.82392 1.67990 1.39237 0.98391 1.38023 0.92492 0.95183 0.95195 0.75681 0.76001 0.75336 0.75955 0.75739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.95 15 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 15 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 15 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 15 8 H 0.06 1.66 7.60 -52.49 -0.40 1.26 15 9 C 0.26 6.96 5.44 -5.20 -0.03 6.93 15 10 N -0.66 -15.16 5.68 -63.38 -0.36 -15.52 15 11 C 0.64 14.38 8.47 -322.23 -2.73 11.65 15 12 N -0.67 -14.61 9.74 -14.79 -0.14 -14.76 15 13 C 0.65 12.09 8.76 -322.23 -2.82 9.27 15 14 N -0.82 -11.13 9.05 29.84 0.27 -10.86 15 15 N -0.70 -12.42 10.56 -14.79 -0.16 -12.57 15 16 C 0.65 11.38 8.76 -322.24 -2.82 8.55 15 17 N -0.82 -9.82 9.05 29.84 0.27 -9.55 15 18 N -0.69 -13.83 10.56 -14.79 -0.16 -13.99 15 19 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 20 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.41 8.64 8.44 -40.82 -0.34 8.29 15 23 H 0.41 4.34 8.95 -40.82 -0.37 3.97 15 24 H 0.42 5.24 8.95 -40.82 -0.37 4.87 15 25 H 0.41 3.86 8.95 -40.82 -0.37 3.50 15 26 H 0.41 4.16 8.95 -40.82 -0.37 3.79 15 LS Contribution 241.38 15.07 3.64 3.64 Total: -1.00 -32.23 241.38 -11.93 -44.16 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -2.18 Total: 15.56 kcal Atomic # 6 Polarization: 31.74 SS G_CDS: -8.82 Total: 22.92 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: 0.46 Total: -102.21 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.23 -11.93 -44.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199182725.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.507 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds