Wall clock time and date at job start Sun Mar 29 2020 21:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00075 * 2 1 4 4 H 1.48500 * 109.47201 * 269.99751 * 3 2 1 5 5 H 1.48502 * 109.47286 * 30.00078 * 3 2 1 6 6 H 1.48503 * 109.47038 * 149.99769 * 3 2 1 7 7 C 1.37875 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00154 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.38014 * 120.00351 * 179.97438 * 10 9 7 12 12 N 1.32939 * 119.99882 * 0.20951 * 11 10 9 13 13 C 1.32928 * 119.99815 * 180.29672 * 12 11 10 14 14 N 1.38010 * 120.00269 * 179.74830 * 13 12 11 15 15 N 1.32945 * 119.99995 * 359.47242 * 13 12 11 16 16 C 1.32933 * 119.99739 * 0.27376 * 15 13 12 17 17 N 1.38013 * 119.99403 * 179.97438 * 16 15 13 18 18 N 1.32931 * 119.99960 * 179.97438 * 11 10 9 19 19 H 0.97005 * 120.00006 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47368 * 59.99995 * 9 7 2 21 21 H 1.09007 * 109.47320 * 299.99874 * 9 7 2 22 22 H 0.97003 * 120.00100 * 359.97438 * 10 9 7 23 23 H 0.97001 * 120.00572 * 179.73121 * 14 13 12 24 24 H 0.97005 * 119.99702 * 359.44726 * 14 13 12 25 25 H 0.96991 * 120.00661 * 359.97438 * 17 16 15 26 26 H 0.97009 * 119.99493 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7428 -4.9139 0.0000 12 7 0.4358 -5.1568 -0.0037 13 6 -0.0073 -6.4100 0.0028 14 7 -1.3641 -6.6622 0.0042 15 7 0.8566 -7.4205 0.0024 16 6 2.1635 -7.1776 0.0009 17 7 3.0603 -8.2267 0.0010 18 7 2.6067 -5.9243 -0.0005 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 3.1566 -3.4355 -0.0009 23 1 -1.6875 -7.5768 0.0050 24 1 -1.9945 -5.9249 0.0086 25 1 2.7370 -9.1411 0.0025 26 1 4.0141 -8.0494 0.0004 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000199182725.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:38 Heat of formation + Delta-G solvation = 50.154674 kcal Electronic energy + Delta-G solvation = -13175.875505 eV Core-core repulsion = 10709.968241 eV Total energy + Delta-G solvation = -2465.907264 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.092 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.11291 -37.76389 -37.06626 -35.29671 -33.94423 -32.43426 -32.09664 -29.04712 -25.19096 -24.45989 -23.41641 -20.39101 -19.50568 -18.51864 -17.44273 -17.09576 -16.71619 -16.48959 -16.24202 -15.97728 -15.02105 -14.76997 -14.74889 -14.03546 -13.37302 -12.92543 -12.83578 -12.46565 -12.18396 -11.44514 -10.71575 -10.38461 -10.25430 -10.02440 -9.68007 -9.25650 -8.26234 -6.41049 0.60372 0.67067 1.44932 1.46788 1.57678 1.80772 2.31475 2.47851 2.54491 3.08408 3.26183 3.76887 3.97690 4.90856 5.19748 5.34999 5.52008 5.60312 5.72191 5.86255 6.06556 6.23827 6.35174 6.63456 6.66737 7.01116 7.12743 7.30386 7.93378 8.85345 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.052347 B = 0.007015 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.760534 B = 3990.336532 C = 4509.950983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.980 3.020 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.290 3.710 10 N -0.667 5.667 11 C 0.632 3.368 12 N -0.701 5.701 13 C 0.633 3.367 14 N -0.790 5.790 15 N -0.690 5.690 16 C 0.632 3.368 17 N -0.787 5.787 18 N -0.697 5.697 19 H 0.269 0.731 20 H -0.002 1.002 21 H -0.002 1.002 22 H 0.413 0.587 23 H 0.426 0.574 24 H 0.421 0.579 25 H 0.426 0.574 26 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 -13.551 0.037 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.804 3.196 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.599 4.599 8 H 0.093 0.907 9 C 0.167 3.833 10 N -0.301 5.301 11 C 0.266 3.734 12 N -0.448 5.448 13 C 0.265 3.735 14 N -0.342 5.342 15 N -0.437 5.437 16 C 0.264 3.736 17 N -0.339 5.339 18 N -0.444 5.444 19 H 0.078 0.922 20 H 0.016 0.984 21 H 0.016 0.984 22 H 0.250 0.750 23 H 0.260 0.740 24 H 0.254 0.746 25 H 0.259 0.741 26 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 2.095 -13.236 0.030 13.401 hybrid contribution 0.254 0.597 -0.005 0.649 sum 2.349 -12.639 0.026 12.856 Atomic orbital electron populations 1.70105 1.07855 1.28474 1.49719 1.25908 0.95803 1.03313 0.93867 0.85224 0.78466 0.77401 0.78533 1.19689 1.20636 1.18521 1.21596 0.94156 0.90922 1.53239 0.90661 1.18556 0.87686 0.82094 0.94915 1.44686 1.10512 1.00458 1.74453 1.19025 0.84149 0.86952 0.83238 1.68108 1.16083 1.22852 1.37715 1.19096 0.88398 0.83288 0.82743 1.41524 0.99806 1.12985 1.79864 1.67974 1.01927 1.34880 1.38961 1.19084 0.85678 0.86034 0.82839 1.41456 1.07386 1.05056 1.80014 1.67999 1.38740 0.98868 1.38790 0.92198 0.98434 0.98434 0.74950 0.74006 0.74642 0.74069 0.74306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.50 13.29 21.45 0.28 -54.21 15 2 C 0.01 0.63 5.46 84.65 0.46 1.09 15 3 Si 0.98 42.69 29.54 68.60 2.03 44.72 15 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 5 H -0.28 -11.98 7.11 99.48 0.71 -11.28 15 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 7 C -0.56 -31.06 9.28 25.60 0.24 -30.82 15 8 H 0.08 3.89 7.60 -2.91 -0.02 3.87 15 9 C 0.29 15.91 5.44 85.63 0.47 16.37 15 10 N -0.67 -31.32 5.68 -354.44 -2.01 -33.34 15 11 C 0.63 28.55 8.47 261.29 2.21 30.77 15 12 N -0.70 -31.22 9.74 -200.70 -1.95 -33.18 15 13 C 0.63 23.24 8.76 261.29 2.29 25.53 15 14 N -0.79 -20.61 9.05 -59.50 -0.54 -21.14 15 15 N -0.69 -23.45 10.56 -200.70 -2.12 -25.57 15 16 C 0.63 21.22 8.76 261.29 2.29 23.51 15 17 N -0.79 -16.78 9.05 -59.51 -0.54 -17.32 15 18 N -0.70 -27.47 10.56 -200.70 -2.12 -29.59 15 19 H 0.27 14.81 8.31 -92.70 -0.77 14.04 15 20 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 15 21 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 15 22 H 0.41 17.78 8.44 -92.71 -0.78 17.00 15 23 H 0.43 8.16 8.95 -92.71 -0.83 7.33 15 24 H 0.42 10.28 8.95 -92.70 -0.83 9.45 15 25 H 0.43 6.65 8.95 -92.72 -0.83 5.82 15 26 H 0.42 7.36 8.95 -92.70 -0.83 6.53 15 Total: -1.00 -69.77 241.38 -1.83 -71.60 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: -2.81 Total: 31.59 kcal Atomic # 6 Polarization: 58.49 SS G_CDS: 7.96 Total: 66.45 kcal Atomic # 7 Polarization: -205.35 SS G_CDS: -9.00 Total: -214.35 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -69.77 -1.83 -71.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199182725.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.752 kcal (2) G-P(sol) polarization free energy of solvation -69.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds