Wall clock time and date at job start Sun Mar 29 2020 21:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.31067 * 126.66134 * 59.68448 * 4 2 1 6 6 N 1.28839 * 107.99311 * 179.90100 * 5 4 2 7 7 N 1.28742 * 109.39352 * 0.37481 * 6 5 4 8 8 N 1.29012 * 108.80924 * 359.76541 * 7 6 5 9 9 C 1.46509 * 126.43852 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46888 * 270.02993 * 9 8 7 11 11 C 1.50701 * 109.46717 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00050 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99761 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99782 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99881 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47200 * 60.00181 * 15 13 11 17 17 H 1.48498 * 109.47154 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47270 * 300.00526 * 15 13 11 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 24 24 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 26 26 H 1.08995 * 109.46954 * 30.02727 * 9 8 7 27 27 H 1.09000 * 109.46807 * 150.02846 * 9 8 7 28 28 H 1.08995 * 109.47105 * 299.99641 * 10 9 8 29 29 H 1.09000 * 109.47517 * 60.00287 * 10 9 8 30 30 H 0.97008 * 119.99506 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 1.7929 -0.3816 -2.4765 6 7 2.3978 -1.2293 -3.2351 7 7 3.0104 -2.0949 -2.5053 8 7 2.8092 -1.8090 -1.2634 9 6 3.3283 -2.5426 -0.1064 10 6 2.3311 -3.6308 0.2967 11 6 2.8647 -4.3850 1.4873 12 1 3.8197 -4.1154 1.9135 13 6 2.1336 -5.4191 2.0324 14 7 0.9709 -5.7476 1.5130 15 14 2.7954 -6.3545 3.5077 16 1 2.9903 -5.4161 4.6420 17 1 1.8275 -7.4105 3.8991 18 1 4.0948 -6.9807 3.1546 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 4.2822 -3.0019 -0.3655 27 1 3.4709 -1.8539 0.7264 28 1 1.3772 -3.1715 0.5558 29 1 2.1885 -4.3195 -0.5360 30 1 0.4568 -6.4755 1.8964 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213340005.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:44 Heat of formation + Delta-G solvation = 87.648620 kcal Electronic energy + Delta-G solvation = -13845.351354 eV Core-core repulsion = 11484.610293 eV Total energy + Delta-G solvation = -2360.741061 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.65955 -36.13415 -35.45213 -33.22456 -31.14812 -30.06432 -27.14512 -25.85827 -23.98444 -22.99676 -21.39200 -20.17961 -17.34255 -16.36499 -16.11116 -15.17636 -14.65623 -14.55605 -13.71693 -13.16727 -12.81364 -12.65518 -12.15940 -12.04190 -11.88886 -11.51651 -11.25769 -11.13662 -11.07894 -10.99316 -10.58046 -10.52450 -10.39863 -9.80417 -9.57629 -9.39965 -8.62889 -6.26863 -4.34463 1.79086 2.61573 2.69550 3.18712 3.24876 3.25941 4.21111 4.28590 4.64698 5.05064 5.08033 5.10800 5.22969 5.55397 5.65503 5.74499 5.80403 5.84605 5.93082 6.00993 6.08996 6.26284 6.28399 6.34554 6.67965 7.23208 7.29793 7.65841 7.97065 8.69875 9.12253 9.32102 10.84042 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.037943 B = 0.008146 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.763457 B = 3436.376746 C = 3746.046602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.012 4.012 3 C -0.140 4.140 4 C 0.182 3.818 5 N -0.313 5.313 6 N -0.098 5.098 7 N -0.098 5.098 8 N -0.287 5.287 9 C 0.108 3.892 10 C 0.014 3.986 11 C -0.534 4.534 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.901 3.099 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 H 0.069 0.931 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.099 0.901 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.027 0.973 29 H 0.030 0.970 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 10.290 1.371 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.199 4.199 4 C -0.096 4.096 5 N -0.164 5.164 6 N -0.091 5.091 7 N -0.084 5.084 8 N -0.088 5.088 9 C -0.011 4.011 10 C -0.024 4.024 11 C -0.572 4.572 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.523 5.523 15 Si 0.728 3.272 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 H 0.088 0.912 20 H 0.081 0.919 21 H 0.085 0.915 22 H 0.117 0.883 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.454 9.973 -0.044 10.078 hybrid contribution 0.324 -0.793 1.750 1.948 sum 1.778 9.180 1.706 9.505 Atomic orbital electron populations 1.21799 0.92275 1.03156 1.02745 1.19745 0.97434 0.95619 0.90540 1.21812 1.01046 0.93956 1.03045 1.25931 0.96191 0.89912 0.97523 1.74794 1.20568 1.22383 0.98674 1.78484 1.07971 0.99552 1.23102 1.78804 1.20423 1.20953 0.88218 1.49018 1.32522 1.19336 1.07912 1.22895 1.01128 0.95778 0.81297 1.19484 0.93385 0.91709 0.97814 1.20846 1.05739 1.16978 1.13660 0.91937 1.24997 0.94724 0.96809 0.97397 1.69954 1.12409 1.29163 1.40810 0.86509 0.78836 0.79520 0.82332 1.19957 1.21056 1.19961 0.91212 0.91868 0.91533 0.88279 0.91168 0.92659 0.91381 0.88047 0.88304 0.95480 0.95137 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.18 37.16 0.34 -1.47 16 2 C -0.01 -0.16 3.26 -91.77 -0.30 -0.46 16 3 C -0.14 -1.53 9.17 37.16 0.34 -1.19 16 4 C 0.18 3.21 6.64 -155.43 -1.03 2.18 16 5 N -0.31 -6.08 12.36 32.70 0.40 -5.67 16 6 N -0.10 -2.06 13.43 60.35 0.81 -1.25 16 7 N -0.10 -2.06 13.29 60.35 0.80 -1.26 16 8 N -0.29 -5.49 3.35 -58.26 -0.19 -5.68 16 9 C 0.11 2.00 6.03 -4.04 -0.02 1.97 16 10 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 11 C -0.53 -13.50 9.11 -34.44 -0.31 -13.82 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 15 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 19 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.10 1.30 6.85 -51.93 -0.36 0.94 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 27 H 0.10 1.54 7.13 -51.93 -0.37 1.17 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 264.02 15.07 3.98 3.98 Total: -1.00 -29.55 264.02 -3.79 -33.34 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -4.07 Total: -3.22 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.23 Total: -10.99 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 2.56 Total: -38.13 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.55 -3.79 -33.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213340005.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.991 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds