Wall clock time and date at job start Sun Mar 29 2020 21:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.31067 * 126.66134 * 59.68448 * 4 2 1 6 6 N 1.28839 * 107.99311 * 179.90100 * 5 4 2 7 7 N 1.28742 * 109.39352 * 0.37481 * 6 5 4 8 8 N 1.29012 * 108.80924 * 359.76541 * 7 6 5 9 9 C 1.46509 * 126.43852 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.46888 * 270.02993 * 9 8 7 11 11 C 1.50701 * 109.46717 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00050 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99761 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99782 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99881 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47200 * 60.00181 * 15 13 11 17 17 H 1.48498 * 109.47154 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47270 * 300.00526 * 15 13 11 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 24 24 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 26 26 H 1.08995 * 109.46954 * 30.02727 * 9 8 7 27 27 H 1.09000 * 109.46807 * 150.02846 * 9 8 7 28 28 H 1.08995 * 109.47105 * 299.99641 * 10 9 8 29 29 H 1.09000 * 109.47517 * 60.00287 * 10 9 8 30 30 H 0.97008 * 119.99506 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 1.7929 -0.3816 -2.4765 6 7 2.3978 -1.2293 -3.2351 7 7 3.0104 -2.0949 -2.5053 8 7 2.8092 -1.8090 -1.2634 9 6 3.3283 -2.5426 -0.1064 10 6 2.3311 -3.6308 0.2967 11 6 2.8647 -4.3850 1.4873 12 1 3.8197 -4.1154 1.9135 13 6 2.1336 -5.4191 2.0324 14 7 0.9709 -5.7476 1.5130 15 14 2.7954 -6.3545 3.5077 16 1 2.9903 -5.4161 4.6420 17 1 1.8275 -7.4105 3.8991 18 1 4.0948 -6.9807 3.1546 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 4.2822 -3.0019 -0.3655 27 1 3.4709 -1.8539 0.7264 28 1 1.3772 -3.1715 0.5558 29 1 2.1885 -4.3195 -0.5360 30 1 0.4568 -6.4755 1.8964 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213340005.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:43 Heat of formation + Delta-G solvation = 68.898961 kcal Electronic energy + Delta-G solvation = -13846.164400 eV Core-core repulsion = 11484.610293 eV Total energy + Delta-G solvation = -2361.554107 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.18192 -37.56033 -36.77962 -35.11745 -32.70171 -31.74885 -28.08071 -27.64967 -25.34696 -24.73572 -23.00556 -21.47100 -19.06080 -17.89504 -17.84153 -16.56198 -16.45557 -15.80797 -15.11377 -14.52650 -14.22436 -14.13159 -13.82950 -13.44481 -13.05927 -12.94856 -12.84674 -12.64271 -12.28483 -12.27389 -12.25277 -12.09118 -11.83513 -11.52000 -11.43375 -10.93124 -10.63213 -8.27377 -6.41432 0.28448 1.13503 1.18716 1.45416 1.46944 1.54821 2.39415 2.99258 3.08870 3.31878 3.79070 4.06312 4.11344 4.17293 4.30022 4.42601 4.50956 4.73423 4.81258 4.87331 4.92602 5.01965 5.16142 5.29730 5.34854 5.36348 5.37578 5.68878 5.99695 6.73408 7.30326 7.57591 8.84640 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.037943 B = 0.008146 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.763457 B = 3436.376746 C = 3746.046602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.015 4.015 3 C -0.134 4.134 4 C 0.193 3.807 5 N -0.327 5.327 6 N -0.113 5.113 7 N -0.121 5.121 8 N -0.294 5.294 9 C 0.120 3.880 10 C 0.023 3.977 11 C -0.541 4.541 12 H 0.083 0.917 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.970 3.030 16 H -0.258 1.258 17 H -0.290 1.290 18 H -0.267 1.267 19 H 0.102 0.898 20 H 0.034 0.966 21 H 0.064 0.936 22 H 0.109 0.891 23 H 0.101 0.899 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.112 0.888 27 H 0.137 0.863 28 H 0.007 0.993 29 H -0.013 1.013 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 11.554 3.315 12.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.037 4.037 3 C -0.192 4.192 4 C -0.084 4.084 5 N -0.177 5.177 6 N -0.107 5.107 7 N -0.107 5.107 8 N -0.095 5.095 9 C 0.001 3.999 10 C -0.016 4.016 11 C -0.579 4.579 12 H 0.101 0.899 13 C -0.194 4.194 14 N -0.570 5.570 15 Si 0.795 3.205 16 H -0.182 1.182 17 H -0.216 1.216 18 H -0.192 1.192 19 H 0.121 0.879 20 H 0.053 0.947 21 H 0.083 0.917 22 H 0.127 0.873 23 H 0.120 0.880 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.130 0.870 27 H 0.154 0.846 28 H 0.026 0.974 29 H 0.006 0.994 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.485 11.256 1.896 11.682 hybrid contribution -0.041 -1.151 1.116 1.604 sum 2.444 10.105 3.012 10.824 Atomic orbital electron populations 1.21808 0.91794 1.01767 1.04335 1.20103 0.97759 0.97082 0.88740 1.21807 1.01226 0.91816 1.04313 1.26787 0.94386 0.88955 0.98315 1.74757 1.20960 1.22548 0.99450 1.78450 1.08427 1.00003 1.23809 1.78761 1.21322 1.21479 0.89149 1.49047 1.33133 1.19872 1.07466 1.22765 0.99597 0.95365 0.82202 1.19251 0.94004 0.92292 0.96013 1.21346 1.06250 1.16685 1.13649 0.89894 1.25973 0.94875 0.98053 1.00457 1.70109 1.14130 1.30066 1.42737 0.85410 0.78010 0.78112 0.79016 1.18223 1.21625 1.19215 0.87922 0.94669 0.91709 0.87337 0.88039 0.92357 0.91992 0.86988 0.84552 0.97443 0.99432 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.18 71.98 0.66 -2.67 16 2 C -0.02 -0.38 3.26 -11.54 -0.04 -0.41 16 3 C -0.13 -2.46 9.17 71.98 0.66 -1.80 16 4 C 0.19 6.61 6.64 138.14 0.92 7.52 16 5 N -0.33 -12.55 12.36 -50.45 -0.62 -13.17 16 6 N -0.11 -4.80 13.43 37.01 0.50 -4.30 16 7 N -0.12 -5.11 13.29 37.02 0.49 -4.62 16 8 N -0.29 -11.08 3.35 -338.25 -1.13 -12.22 16 9 C 0.12 4.24 6.03 86.38 0.52 4.76 16 10 C 0.02 1.08 5.30 29.85 0.16 1.23 16 11 C -0.54 -26.86 9.11 25.60 0.23 -26.62 16 12 H 0.08 3.70 7.74 -2.91 -0.02 3.68 16 13 C 0.01 0.29 5.46 84.66 0.46 0.76 16 14 N -0.93 -53.49 13.29 21.45 0.28 -53.21 16 15 Si 0.97 40.33 29.54 68.60 2.03 42.35 16 16 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 17 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 19 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 20 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 21 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 22 H 0.11 2.51 6.85 -2.39 -0.02 2.50 16 23 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 27 H 0.14 3.82 7.13 -2.39 -0.02 3.80 16 28 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 30 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 Total: -1.00 -64.59 264.02 6.24 -58.35 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 1.12 Total: 4.05 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 3.57 Total: -17.23 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -0.48 Total: -87.51 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.35 kcal Total: -64.59 6.24 -58.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213340005.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.245 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds