Wall clock time and date at job start Sun Mar 29 2020 21:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 116.99888 * 2 1 4 4 C 1.38716 * 120.04064 * 0.02934 * 3 2 1 5 5 C 1.38342 * 119.91519 * 179.97438 * 4 3 2 6 6 F 1.35099 * 119.99641 * 179.97438 * 5 4 3 7 7 C 1.38523 * 120.00892 * 0.02562 * 5 4 3 8 8 C 1.38211 * 120.08179 * 359.67971 * 7 5 4 9 9 C 1.38180 * 120.07967 * 0.59469 * 8 7 5 10 10 C 1.50699 * 120.00251 * 179.70026 * 9 8 7 11 11 C 1.50706 * 109.46817 * 264.72881 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.72198 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99350 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47353 * 89.99430 * 15 13 11 17 17 H 1.48494 * 109.47031 * 209.99977 * 15 13 11 18 18 H 1.48504 * 109.46680 * 329.99678 * 15 13 11 19 19 H 1.09004 * 109.47235 * 59.99579 * 1 2 3 20 20 H 1.09007 * 109.47319 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47262 * 299.99247 * 1 2 3 22 22 H 1.07995 * 120.04121 * 359.94981 * 4 3 2 23 23 H 1.07994 * 119.95841 * 180.02562 * 7 5 4 24 24 H 1.08001 * 119.95887 * 180.29643 * 8 7 5 25 25 H 1.09000 * 109.47247 * 144.72944 * 10 9 8 26 26 H 1.09001 * 109.47358 * 24.72370 * 10 9 8 27 27 H 0.97005 * 119.99656 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3748 0.0006 5 6 1.9220 3.6060 0.0011 6 9 1.1886 4.7406 0.0012 7 6 3.3054 3.6757 0.0005 8 6 4.0575 2.5162 0.0061 9 6 3.4312 1.2845 -0.0002 10 6 4.2530 0.0213 -0.0009 11 6 4.4229 -0.4665 -1.4167 12 1 3.9764 0.0807 -2.2337 13 6 5.1442 -1.6144 -1.6684 14 7 5.2920 -2.0403 -2.9038 15 14 5.9100 -2.5653 -0.2546 16 1 4.9441 -3.5782 0.2415 17 1 7.1427 -3.2459 -0.7262 18 1 6.2521 -1.6274 0.8448 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 0.2127 2.3198 0.0003 23 1 3.7970 4.6373 0.0014 24 1 5.1360 2.5729 0.0104 25 1 3.7456 -0.7427 0.5881 26 1 5.2320 0.2243 0.4333 27 1 5.7991 -2.8481 -3.0809 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214203114.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:23 Heat of formation + Delta-G solvation = -64.517350 kcal Electronic energy + Delta-G solvation = -13428.789898 eV Core-core repulsion = 10873.404618 eV Total energy + Delta-G solvation = -2555.385280 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.57596 -39.67695 -36.85969 -33.33280 -31.33942 -29.90065 -27.69557 -26.65865 -22.98608 -22.04625 -20.53000 -18.00902 -16.77065 -16.56754 -15.50607 -15.39336 -15.08567 -14.99454 -14.16277 -14.06032 -13.41518 -12.80322 -12.46734 -12.20257 -11.76857 -11.52547 -11.18832 -10.98267 -10.62270 -10.43119 -10.07110 -9.98173 -9.34858 -8.53369 -8.36514 -7.52780 -6.02836 -4.00695 1.63860 1.75911 3.32520 3.39444 3.42003 3.69360 4.10482 4.45712 4.61769 5.09354 5.26273 5.29713 5.35610 5.39572 5.51190 5.70728 5.81540 6.04493 6.40674 6.54631 6.57769 6.81288 7.02436 7.21579 7.41432 7.72565 7.85104 8.53544 9.01639 9.57598 11.10437 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.038224 B = 0.009466 C = 0.008425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.339144 B = 2957.329340 C = 3322.759746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.290 6.290 3 C 0.154 3.846 4 C -0.248 4.248 5 C 0.105 3.895 6 F -0.149 7.149 7 C -0.189 4.189 8 C -0.062 4.062 9 C -0.069 4.069 10 C 0.023 3.977 11 C -0.505 4.505 12 H 0.072 0.928 13 C 0.069 3.931 14 N -0.902 5.902 15 Si 0.878 3.122 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.265 1.265 19 H 0.052 0.948 20 H 0.098 0.902 21 H 0.049 0.951 22 H 0.132 0.868 23 H 0.128 0.872 24 H 0.137 0.863 25 H 0.030 0.970 26 H 0.028 0.972 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 7.209 7.448 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.202 6.202 3 C 0.108 3.892 4 C -0.268 4.268 5 C 0.086 3.914 6 F -0.128 7.128 7 C -0.208 4.208 8 C -0.081 4.081 9 C -0.069 4.069 10 C -0.014 4.014 11 C -0.543 4.543 12 H 0.090 0.910 13 C -0.132 4.132 14 N -0.541 5.541 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.189 1.189 19 H 0.071 0.929 20 H 0.116 0.884 21 H 0.067 0.933 22 H 0.150 0.850 23 H 0.146 0.854 24 H 0.155 0.845 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.855 6.904 7.336 12.185 hybrid contribution -0.077 -0.211 0.488 0.537 sum -6.932 6.693 7.824 12.412 Atomic orbital electron populations 1.23034 0.79612 1.03689 1.00691 1.86298 1.20106 1.25895 1.87892 1.18606 0.91843 0.83476 0.95286 1.21007 1.00410 0.91398 1.13988 1.17241 0.89193 0.81124 1.03847 1.91434 1.77612 1.49447 1.94264 1.20937 0.91641 0.99826 1.08406 1.20770 1.00158 0.90086 0.97044 1.19802 0.90582 0.97436 0.99129 1.18661 0.93899 0.89960 0.98866 1.20883 1.33118 1.09590 0.90733 0.91012 1.24962 0.95883 0.96916 0.95444 1.69903 1.41575 1.23703 1.18943 0.86808 0.79017 0.80547 0.83136 1.20173 1.21366 1.18949 0.92924 0.88402 0.93260 0.85032 0.85390 0.84534 0.95163 0.95338 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.34 15 2 O -0.29 -5.68 9.63 -19.42 -0.19 -5.87 15 3 C 0.15 3.04 6.66 -39.22 -0.26 2.78 15 4 C -0.25 -4.25 9.02 -39.37 -0.35 -4.61 15 5 C 0.11 1.78 7.30 -39.44 -0.29 1.49 15 6 F -0.15 -2.40 17.27 2.25 0.04 -2.36 15 7 C -0.19 -3.10 10.02 -39.49 -0.40 -3.50 15 8 C -0.06 -1.14 9.67 -39.61 -0.38 -1.52 15 9 C -0.07 -1.45 5.08 -104.46 -0.53 -1.98 15 10 C 0.02 0.56 3.89 -29.03 -0.11 0.45 15 11 C -0.51 -14.43 9.65 -34.44 -0.33 -14.76 15 12 H 0.07 2.25 7.98 -52.49 -0.42 1.83 15 13 C 0.07 2.00 5.47 -17.82 -0.10 1.91 15 14 N -0.90 -27.78 13.96 55.43 0.77 -27.01 15 15 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 15 16 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 18 H -0.26 -6.16 6.54 56.52 0.37 -5.79 15 19 H 0.05 0.67 7.66 -51.93 -0.40 0.27 15 20 H 0.10 1.14 8.14 -51.93 -0.42 0.71 15 21 H 0.05 0.56 7.66 -51.93 -0.40 0.17 15 22 H 0.13 1.90 6.30 -52.49 -0.33 1.57 15 23 H 0.13 1.75 8.06 -52.49 -0.42 1.32 15 24 H 0.14 2.25 8.06 -52.49 -0.42 1.83 15 25 H 0.03 0.74 7.12 -51.93 -0.37 0.37 15 26 H 0.03 0.66 7.11 -51.93 -0.37 0.29 15 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 LS Contribution 242.05 15.07 3.65 3.65 Total: -1.00 -31.34 242.05 -4.88 -36.22 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -2.72 Total: -3.04 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -1.77 Total: -18.41 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.77 Total: -27.01 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.19 Total: -5.87 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.34 -4.88 -36.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214203114.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.301 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds