Wall clock time and date at job start Sun Mar 29 2020 21:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 116.99888 * 2 1 4 4 C 1.38716 * 120.04064 * 0.02934 * 3 2 1 5 5 C 1.38342 * 119.91519 * 179.97438 * 4 3 2 6 6 F 1.35099 * 119.99641 * 179.97438 * 5 4 3 7 7 C 1.38523 * 120.00892 * 0.02562 * 5 4 3 8 8 C 1.38211 * 120.08179 * 359.67971 * 7 5 4 9 9 C 1.38180 * 120.07967 * 0.59469 * 8 7 5 10 10 C 1.50699 * 120.00251 * 179.70026 * 9 8 7 11 11 C 1.50706 * 109.46817 * 264.72881 * 10 9 8 12 12 H 1.07995 * 120.00167 * 359.72198 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99350 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00608 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47353 * 89.99430 * 15 13 11 17 17 H 1.48494 * 109.47031 * 209.99977 * 15 13 11 18 18 H 1.48504 * 109.46680 * 329.99678 * 15 13 11 19 19 H 1.09004 * 109.47235 * 59.99579 * 1 2 3 20 20 H 1.09007 * 109.47319 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47262 * 299.99247 * 1 2 3 22 22 H 1.07995 * 120.04121 * 359.94981 * 4 3 2 23 23 H 1.07994 * 119.95841 * 180.02562 * 7 5 4 24 24 H 1.08001 * 119.95887 * 180.29643 * 8 7 5 25 25 H 1.09000 * 109.47247 * 144.72944 * 10 9 8 26 26 H 1.09001 * 109.47358 * 24.72370 * 10 9 8 27 27 H 0.97005 * 119.99656 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3748 0.0006 5 6 1.9220 3.6060 0.0011 6 9 1.1886 4.7406 0.0012 7 6 3.3054 3.6757 0.0005 8 6 4.0575 2.5162 0.0061 9 6 3.4312 1.2845 -0.0002 10 6 4.2530 0.0213 -0.0009 11 6 4.4229 -0.4665 -1.4167 12 1 3.9764 0.0807 -2.2337 13 6 5.1442 -1.6144 -1.6684 14 7 5.2920 -2.0403 -2.9038 15 14 5.9100 -2.5653 -0.2546 16 1 4.9441 -3.5782 0.2415 17 1 7.1427 -3.2459 -0.7262 18 1 6.2521 -1.6274 0.8448 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 0.2127 2.3198 0.0003 23 1 3.7970 4.6373 0.0014 24 1 5.1360 2.5729 0.0104 25 1 3.7456 -0.7427 0.5881 26 1 5.2320 0.2243 0.4333 27 1 5.7991 -2.8481 -3.0809 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214203114.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:22 Heat of formation + Delta-G solvation = -84.288471 kcal Electronic energy + Delta-G solvation = -13429.647238 eV Core-core repulsion = 10873.404618 eV Total energy + Delta-G solvation = -2556.242620 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.88703 -41.06539 -38.23906 -35.32135 -33.18542 -31.26123 -29.32752 -27.99110 -24.82620 -23.39217 -22.14861 -19.35218 -18.94514 -17.93088 -16.84190 -16.77192 -16.66073 -16.27255 -15.93525 -15.42136 -14.91407 -14.49354 -14.19436 -13.73814 -13.35918 -13.12683 -12.57663 -12.49768 -12.14790 -11.98542 -11.78790 -11.74360 -11.50224 -10.74212 -9.75436 -8.99827 -8.25323 -6.28823 0.22622 0.38111 1.39682 1.40819 1.52636 2.39310 2.43074 2.68972 3.09583 3.27168 3.80989 4.01078 4.08674 4.30145 4.39230 4.40156 4.67106 4.71076 4.96678 5.01612 5.11856 5.21374 5.32300 5.59685 5.70471 5.87339 6.28095 6.52287 6.75350 7.33509 8.91582 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.038224 B = 0.009466 C = 0.008425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.339144 B = 2957.329340 C = 3322.759746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.141 3.859 4 C -0.245 4.245 5 C 0.108 3.892 6 F -0.141 7.141 7 C -0.183 4.183 8 C -0.062 4.062 9 C -0.111 4.111 10 C 0.032 3.968 11 C -0.510 4.510 12 H 0.024 0.976 13 C 0.007 3.993 14 N -0.952 5.952 15 Si 0.949 3.051 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.242 1.242 19 H 0.060 0.940 20 H 0.114 0.886 21 H 0.074 0.926 22 H 0.158 0.842 23 H 0.160 0.840 24 H 0.150 0.850 25 H 0.026 0.974 26 H 0.038 0.962 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 8.137 9.208 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.095 3.905 4 C -0.264 4.264 5 C 0.089 3.911 6 F -0.119 7.119 7 C -0.201 4.201 8 C -0.080 4.080 9 C -0.112 4.112 10 C -0.005 4.005 11 C -0.548 4.548 12 H 0.043 0.957 13 C -0.189 4.189 14 N -0.593 5.593 15 Si 0.772 3.228 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.165 1.165 19 H 0.078 0.922 20 H 0.132 0.868 21 H 0.092 0.908 22 H 0.175 0.825 23 H 0.178 0.822 24 H 0.168 0.832 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.221 7.856 9.109 14.029 hybrid contribution -0.092 -0.401 -0.132 0.432 sum -7.313 7.455 8.977 13.771 Atomic orbital electron populations 1.23370 0.76876 1.05437 1.02216 1.86234 1.23146 1.26428 1.88044 1.18730 0.91736 0.84396 0.95641 1.21195 1.01659 0.90597 1.12935 1.17378 0.89577 0.81279 1.02878 1.91460 1.77455 1.48945 1.94087 1.21210 0.91518 1.00508 1.06891 1.20950 1.01073 0.89728 0.96294 1.19789 0.91451 0.97219 1.02748 1.18443 0.94909 0.91495 0.95652 1.21110 1.32296 1.09293 0.92052 0.95724 1.25939 0.96530 0.98077 0.98372 1.70064 1.43040 1.24620 1.21589 0.85673 0.78042 0.79199 0.79846 1.19491 1.20839 1.16543 0.92169 0.86752 0.90792 0.82459 0.82190 0.83219 0.95624 0.94376 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 15 2 O -0.33 -12.69 9.63 -92.40 -0.89 -13.58 15 3 C 0.14 5.49 6.66 22.50 0.15 5.64 15 4 C -0.24 -7.87 9.02 22.41 0.20 -7.67 15 5 C 0.11 3.37 7.30 22.36 0.16 3.53 15 6 F -0.14 -4.08 17.27 44.97 0.78 -3.30 15 7 C -0.18 -5.50 10.02 22.33 0.22 -5.28 15 8 C -0.06 -2.19 9.67 22.25 0.22 -1.98 15 9 C -0.11 -4.68 5.08 -19.76 -0.10 -4.78 15 10 C 0.03 1.55 3.89 29.10 0.11 1.67 15 11 C -0.51 -29.93 9.65 25.60 0.25 -29.68 15 12 H 0.02 1.62 7.98 -2.91 -0.02 1.60 15 13 C 0.01 0.43 5.47 84.66 0.46 0.89 15 14 N -0.95 -60.32 13.96 21.45 0.30 -60.02 15 15 Si 0.95 44.33 27.47 68.60 1.88 46.21 15 16 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 18 H -0.24 -10.33 6.54 99.48 0.65 -9.68 15 19 H 0.06 1.43 7.66 -2.39 -0.02 1.41 15 20 H 0.11 2.49 8.14 -2.38 -0.02 2.47 15 21 H 0.07 1.51 7.66 -2.39 -0.02 1.50 15 22 H 0.16 4.10 6.30 -2.91 -0.02 4.08 15 23 H 0.16 3.75 8.06 -2.91 -0.02 3.72 15 24 H 0.15 4.71 8.06 -2.91 -0.02 4.68 15 25 H 0.03 1.24 7.12 -2.39 -0.02 1.22 15 26 H 0.04 1.73 7.11 -2.39 -0.02 1.72 15 27 H 0.27 15.68 8.31 -92.70 -0.77 14.91 15 Total: -1.00 -68.91 242.05 5.98 -62.93 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 1.12 Total: 3.93 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 2.79 Total: -36.17 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.30 Total: -60.02 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.89 Total: -13.58 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -68.91 5.98 -62.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214203114.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.355 kcal (2) G-P(sol) polarization free energy of solvation -68.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds