Wall clock time and date at job start Sun Mar 29 2020 21:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.38130 * 120.03434 * 265.00646 * 10 9 7 12 12 C 1.38360 * 120.06386 * 180.02562 * 11 10 9 13 13 Cl 1.73596 * 119.93923 * 179.97438 * 12 11 10 14 14 C 1.38405 * 120.12243 * 359.96772 * 12 11 10 15 15 C 1.38084 * 120.06055 * 0.02562 * 14 12 11 16 16 C 1.38882 * 120.02967 * 84.72560 * 10 9 7 17 17 N 1.39742 * 120.05969 * 359.97438 * 16 10 9 18 18 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 20 20 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 21 21 H 1.07996 * 119.96892 * 359.97438 * 11 10 9 22 22 H 1.07998 * 119.96800 * 180.02562 * 14 12 11 23 23 H 1.07998 * 120.02729 * 180.02562 * 15 14 12 24 24 H 0.96995 * 119.99885 * 359.97438 * 17 16 10 25 25 H 0.96999 * 119.99869 * 179.97438 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2302 -3.6446 0.0028 11 6 2.5949 -4.2399 -1.1892 12 6 3.4935 -5.2920 -1.1921 13 17 3.9490 -6.0381 -2.6919 14 6 4.0300 -5.7505 -0.0015 15 6 3.6691 -5.1591 1.1929 16 6 2.7714 -4.0990 1.1984 17 7 2.4092 -3.4945 2.4051 18 1 -0.4850 0.8401 0.0004 19 1 0.6281 -2.5552 0.8979 20 1 0.6206 -2.5586 -0.8820 21 1 2.1775 -3.8843 -2.1196 22 1 4.7315 -6.5716 -0.0068 23 1 4.0884 -5.5171 2.1216 24 1 1.7796 -2.7566 2.4081 25 1 2.7874 -3.8128 3.2397 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217108957.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:45 Heat of formation + Delta-G solvation = -0.240300 kcal Electronic energy + Delta-G solvation = -11424.762829 eV Core-core repulsion = 9235.075275 eV Total energy + Delta-G solvation = -2189.687554 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.94099 -36.04125 -33.75297 -33.24224 -31.21260 -28.20813 -26.81516 -23.41019 -21.76119 -20.25413 -16.60934 -16.41479 -16.30599 -15.36698 -14.47531 -13.71814 -13.38364 -13.14221 -12.59422 -12.21924 -11.79937 -11.51690 -11.19946 -11.01454 -10.73423 -10.49596 -10.37683 -9.66524 -9.57418 -9.46994 -8.47777 -8.11154 -6.79650 -6.08320 -4.13706 2.00694 2.05147 2.78695 3.27241 3.34036 3.37810 4.32199 4.47444 4.56513 5.24581 5.40299 5.49144 5.92198 6.07955 6.27548 6.57565 6.73064 6.89072 6.96832 7.31853 7.49681 7.68633 7.86554 8.10191 8.26968 8.43615 8.92334 9.51066 10.99728 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.035589 B = 0.008835 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.579344 B = 3168.522631 C = 3573.197460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.057 3.943 10 C -0.101 4.101 11 C -0.070 4.070 12 C -0.093 4.093 13 Cl -0.103 7.103 14 C -0.087 4.087 15 C -0.201 4.201 16 C 0.223 3.777 17 N -0.869 5.869 18 H 0.262 0.738 19 H 0.026 0.974 20 H 0.030 0.970 21 H 0.126 0.874 22 H 0.119 0.881 23 H 0.117 0.883 24 H 0.411 0.589 25 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.425 -8.783 1.799 10.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.020 3.980 10 C -0.106 4.106 11 C -0.090 4.090 12 C -0.121 4.121 13 Cl -0.075 7.075 14 C -0.106 4.106 15 C -0.224 4.224 16 C 0.116 3.884 17 N -0.408 5.408 18 H 0.072 0.928 19 H 0.044 0.956 20 H 0.048 0.952 21 H 0.144 0.856 22 H 0.137 0.863 23 H 0.135 0.865 24 H 0.243 0.757 25 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.300 -8.719 1.649 10.336 hybrid contribution 0.469 1.058 0.157 1.169 sum 5.770 -7.661 1.807 9.759 Atomic orbital electron populations 1.69955 1.05994 1.26863 1.50433 1.25010 0.94846 0.99212 0.95174 0.86558 0.79794 0.83214 0.78282 1.20550 1.21233 1.19875 1.21084 0.93062 0.89807 1.51015 0.92495 1.18164 0.92277 0.89302 0.98228 1.20148 1.01283 0.99038 0.90096 1.20720 0.96068 0.93699 0.98514 1.20532 1.05010 1.00738 0.85809 1.98291 1.92246 1.82352 1.34614 1.20458 0.99777 0.99851 0.90547 1.20344 1.04118 1.00365 0.97571 1.17742 0.92439 0.91094 0.87084 1.42617 1.52724 1.40603 1.04825 0.92815 0.95578 0.95179 0.85604 0.86313 0.86456 0.75749 0.78566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 13.29 55.43 0.74 -24.76 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.51 -13.74 9.09 -34.44 -0.31 -14.05 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.06 1.41 4.53 -29.04 -0.13 1.28 15 10 C -0.10 -2.16 5.09 -104.42 -0.53 -2.69 15 11 C -0.07 -1.41 9.46 -39.58 -0.37 -1.78 15 12 C -0.09 -1.65 6.32 -39.47 -0.25 -1.90 15 13 Cl -0.10 -1.64 28.95 -51.86 -1.50 -3.14 15 14 C -0.09 -1.41 9.82 -39.58 -0.39 -1.80 15 15 C -0.20 -3.28 9.90 -39.39 -0.39 -3.66 15 16 C 0.22 4.17 6.74 -83.76 -0.56 3.61 15 17 N -0.87 -14.45 8.99 32.42 0.29 -14.16 15 18 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 19 H 0.03 0.66 6.83 -51.93 -0.35 0.30 15 20 H 0.03 0.79 8.05 -51.93 -0.42 0.37 15 21 H 0.13 2.49 8.06 -52.49 -0.42 2.07 15 22 H 0.12 1.63 8.06 -52.49 -0.42 1.20 15 23 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 24 H 0.41 7.51 6.94 -40.82 -0.28 7.23 15 25 H 0.39 5.04 8.84 -40.82 -0.36 4.68 15 LS Contribution 239.37 15.07 3.61 3.61 Total: -1.00 -28.24 239.37 -7.15 -35.40 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -2.23 Total: 6.47 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -3.04 Total: -19.48 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 1.03 Total: -38.92 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -1.50 Total: -3.14 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.24 -7.15 -35.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217108957.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.155 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds