Wall clock time and date at job start Sun Mar 29 2020 21:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.38130 * 120.03434 * 265.00646 * 10 9 7 12 12 C 1.38360 * 120.06386 * 180.02562 * 11 10 9 13 13 Cl 1.73596 * 119.93923 * 179.97438 * 12 11 10 14 14 C 1.38405 * 120.12243 * 359.96772 * 12 11 10 15 15 C 1.38084 * 120.06055 * 0.02562 * 14 12 11 16 16 C 1.38882 * 120.02967 * 84.72560 * 10 9 7 17 17 N 1.39742 * 120.05969 * 359.97438 * 16 10 9 18 18 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 20 20 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 21 21 H 1.07996 * 119.96892 * 359.97438 * 11 10 9 22 22 H 1.07998 * 119.96800 * 180.02562 * 14 12 11 23 23 H 1.07998 * 120.02729 * 180.02562 * 15 14 12 24 24 H 0.96995 * 119.99885 * 359.97438 * 17 16 10 25 25 H 0.96999 * 119.99869 * 179.97438 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2302 -3.6446 0.0028 11 6 2.5949 -4.2399 -1.1892 12 6 3.4935 -5.2920 -1.1921 13 17 3.9490 -6.0381 -2.6919 14 6 4.0300 -5.7505 -0.0015 15 6 3.6691 -5.1591 1.1929 16 6 2.7714 -4.0990 1.1984 17 7 2.4092 -3.4945 2.4051 18 1 -0.4850 0.8401 0.0004 19 1 0.6281 -2.5552 0.8979 20 1 0.6206 -2.5586 -0.8820 21 1 2.1775 -3.8843 -2.1196 22 1 4.7315 -6.5716 -0.0068 23 1 4.0884 -5.5171 2.1216 24 1 1.7796 -2.7566 2.4081 25 1 2.7874 -3.8128 3.2397 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217108957.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:45 Heat of formation + Delta-G solvation = -17.066964 kcal Electronic energy + Delta-G solvation = -11425.492488 eV Core-core repulsion = 9235.075275 eV Total energy + Delta-G solvation = -2190.417213 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.046 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.38081 -37.37719 -35.44360 -34.88010 -32.93508 -29.75149 -28.50033 -25.28790 -23.20818 -21.80603 -18.48953 -17.92998 -17.81762 -16.88978 -16.29609 -15.11860 -14.80274 -14.72644 -14.24981 -13.89761 -13.55371 -13.07869 -12.84306 -12.70150 -12.43403 -12.22420 -11.91173 -11.53820 -11.25077 -10.96241 -10.58640 -9.61420 -8.31433 -8.06109 -6.30083 0.57431 0.63632 1.40162 1.41597 1.43483 1.51998 2.40616 2.97455 3.12865 3.21883 4.05522 4.14794 4.49444 4.64599 4.83382 5.09873 5.20849 5.39158 5.41040 5.50549 5.76178 5.83440 5.98952 6.21011 6.69591 6.81729 7.16838 7.38561 8.90460 Molecular weight = 211.05amu Principal moments of inertia in cm(-1) A = 0.035589 B = 0.008835 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.579344 B = 3168.522631 C = 3573.197460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.049 0.951 9 C 0.069 3.931 10 C -0.138 4.138 11 C -0.083 4.083 12 C -0.101 4.101 13 Cl -0.087 7.087 14 C -0.075 4.075 15 C -0.189 4.189 16 C 0.214 3.786 17 N -0.863 5.863 18 H 0.264 0.736 19 H 0.013 0.987 20 H -0.003 1.003 21 H 0.112 0.888 22 H 0.154 0.846 23 H 0.156 0.844 24 H 0.401 0.599 25 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.344 -9.640 2.616 12.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.557 4.557 8 H 0.068 0.932 9 C 0.032 3.968 10 C -0.142 4.142 11 C -0.102 4.102 12 C -0.130 4.130 13 Cl -0.059 7.059 14 C -0.094 4.094 15 C -0.212 4.212 16 C 0.107 3.893 17 N -0.402 5.402 18 H 0.073 0.927 19 H 0.031 0.969 20 H 0.015 0.985 21 H 0.131 0.869 22 H 0.171 0.829 23 H 0.174 0.826 24 H 0.231 0.769 25 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.236 -9.597 2.486 12.273 hybrid contribution -0.107 1.228 -0.118 1.238 sum 7.130 -8.369 2.368 11.246 Atomic orbital electron populations 1.70067 1.07449 1.27776 1.51441 1.25805 0.95612 1.02621 0.94817 0.85544 0.78701 0.79105 0.78272 1.20343 1.20567 1.19158 1.21305 0.92760 0.91085 1.50523 0.93233 1.17866 0.92478 0.90501 0.95932 1.19884 1.02717 0.99557 0.92080 1.20666 0.97068 0.94831 0.97658 1.20597 1.04695 1.00326 0.87340 1.98293 1.91974 1.81829 1.33755 1.20896 0.99028 0.99840 0.89620 1.20736 1.02498 0.98708 0.99278 1.17904 0.92829 0.91892 0.86643 1.42569 1.52331 1.40056 1.05232 0.92667 0.96867 0.98467 0.86946 0.82857 0.82629 0.76883 0.76392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.12 13.29 21.45 0.28 -53.84 15 2 C 0.01 0.55 5.46 84.66 0.46 1.01 15 3 Si 0.96 43.47 29.54 68.60 2.03 45.50 15 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 15 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 7 C -0.52 -28.50 9.09 25.60 0.23 -28.26 15 8 H 0.05 2.74 7.74 -2.92 -0.02 2.72 15 9 C 0.07 3.57 4.53 29.10 0.13 3.70 15 10 C -0.14 -5.95 5.09 -19.74 -0.10 -6.05 15 11 C -0.08 -3.33 9.46 22.27 0.21 -3.12 15 12 C -0.10 -3.43 6.32 22.34 0.14 -3.28 15 13 Cl -0.09 -2.60 28.95 -2.72 -0.08 -2.68 15 14 C -0.07 -2.16 9.82 22.27 0.22 -1.94 15 15 C -0.19 -5.51 9.90 22.40 0.22 -5.29 15 16 C 0.21 7.75 6.74 38.20 0.26 8.01 15 17 N -0.86 -27.69 8.99 -51.34 -0.46 -28.15 15 18 H 0.26 14.57 8.31 -92.71 -0.77 13.80 15 19 H 0.01 0.70 6.83 -2.39 -0.02 0.68 15 20 H 0.00 -0.17 8.05 -2.39 -0.02 -0.19 15 21 H 0.11 4.66 8.06 -2.91 -0.02 4.64 15 22 H 0.15 3.40 8.06 -2.91 -0.02 3.38 15 23 H 0.16 3.34 8.06 -2.91 -0.02 3.32 15 24 H 0.40 14.73 6.94 -92.71 -0.64 14.09 15 25 H 0.41 9.64 8.84 -92.71 -0.82 8.82 15 Total: -1.00 -60.85 239.37 3.30 -57.55 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.24 Total: 16.86 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 1.78 Total: -35.23 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -0.18 Total: -81.99 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.68 kcal Total: -60.85 3.30 -57.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217108957.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.480 kcal (2) G-P(sol) polarization free energy of solvation -60.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds