Wall clock time and date at job start Sun Mar 29 2020 21:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37095 * 120.00208 * 2 1 4 4 H 1.08000 * 120.00459 * 204.39698 * 3 2 1 5 5 C 1.38951 * 119.99981 * 24.39170 * 3 2 1 6 6 N 1.31412 * 119.99823 * 12.64731 * 5 3 2 7 7 Si 1.86802 * 120.00019 * 192.64732 * 5 3 2 8 8 H 1.48495 * 109.47038 * 60.00075 * 7 5 3 9 9 H 1.48504 * 109.46991 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47061 * 300.00263 * 7 5 3 11 11 C 1.34778 * 120.00104 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00249 * 179.97438 * 11 2 1 13 13 C 1.50700 * 119.99576 * 359.97438 * 11 2 1 14 14 N 1.46505 * 109.46934 * 180.02562 * 13 11 2 15 15 C 1.34429 * 126.82050 * 125.00556 * 14 13 11 16 16 N 1.30834 * 108.07245 * 179.97438 * 15 14 13 17 17 C 1.33242 * 109.83418 * 359.97438 * 16 15 14 18 18 N 1.30717 * 108.94331 * 0.26474 * 17 16 15 19 19 H 1.09003 * 109.46975 * 265.86699 * 1 2 3 20 20 H 1.09004 * 109.47230 * 25.86058 * 1 2 3 21 21 H 1.08999 * 109.47459 * 145.86824 * 1 2 3 22 22 H 0.96997 * 119.99800 * 179.97438 * 6 5 3 23 23 H 1.08998 * 109.47202 * 60.00224 * 13 11 2 24 24 H 1.08995 * 109.47410 * 300.00014 * 13 11 2 25 25 H 1.07991 * 125.96252 * 359.96789 * 15 14 13 26 26 H 1.07993 * 125.53078 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2291 -0.3863 5 6 1.5488 2.3369 0.4970 6 7 0.4346 2.2491 1.1882 7 14 2.3237 4.0073 0.1825 8 1 2.4039 4.2481 -1.2806 9 1 1.4939 5.0647 0.8140 10 1 3.6895 4.0368 0.7646 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 7 2.3373 -3.5858 -0.0005 15 6 2.3916 -4.5993 0.8809 16 7 3.3797 -5.3846 0.5362 17 6 3.9764 -4.9077 -0.5555 18 7 3.3771 -3.8043 -0.9190 19 1 -0.3633 -0.0741 1.0250 20 1 -0.3634 0.9248 -0.4483 21 1 -0.3634 -0.8506 -0.5766 22 1 0.0148 3.0516 1.5354 23 1 0.7583 -2.5298 -0.8903 24 1 0.7590 -2.5302 0.8896 25 1 1.7344 -4.7406 1.7261 26 1 4.8208 -5.3575 -1.0564 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227422300.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:16 Heat of formation + Delta-G solvation = 73.648981 kcal Electronic energy + Delta-G solvation = -13591.832330 eV Core-core repulsion = 11094.651104 eV Total energy + Delta-G solvation = -2497.181226 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.64359 -38.50918 -34.88316 -33.40868 -31.72071 -30.80378 -27.94060 -26.22055 -24.36405 -21.84794 -21.58002 -19.23479 -17.04970 -16.81078 -16.27919 -15.07521 -14.96008 -14.52208 -14.18686 -13.93937 -13.61002 -12.63761 -12.41452 -11.80301 -11.53812 -11.39050 -11.28502 -10.93775 -10.47216 -10.37416 -9.68470 -9.57743 -9.37330 -9.10429 -8.45475 -7.79136 -6.43487 -3.99741 2.04189 2.67540 3.13023 3.19678 3.24058 3.33078 3.68623 4.03789 4.58147 4.60340 4.94568 5.07378 5.19170 5.40767 5.58465 5.71146 6.13321 6.55865 6.67738 6.82336 7.03804 7.11133 7.47438 8.00305 8.35954 8.43993 9.06532 9.26433 9.80889 10.61463 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.066490 B = 0.007780 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.012062 B = 3597.910758 C = 3861.253479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.441 5.441 3 C -0.306 4.306 4 H 0.098 0.902 5 C 0.033 3.967 6 N -0.882 5.882 7 Si 0.929 3.071 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.432 3.568 12 O -0.562 6.562 13 C 0.115 3.885 14 N -0.352 5.352 15 C 0.244 3.756 16 N -0.554 5.554 17 C 0.176 3.824 18 N -0.282 5.282 19 H 0.055 0.945 20 H 0.079 0.921 21 H 0.025 0.975 22 H 0.270 0.730 23 H 0.103 0.897 24 H 0.117 0.883 25 H 0.215 0.785 26 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 -7.442 -0.934 8.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.434 4.434 4 H 0.116 0.884 5 C -0.171 4.171 6 N -0.521 5.521 7 Si 0.755 3.245 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.197 1.197 11 C 0.218 3.782 12 O -0.444 6.444 13 C -0.011 4.011 14 N -0.142 5.142 15 C -0.053 4.053 16 N -0.282 5.282 17 C -0.127 4.127 18 N -0.109 5.109 19 H 0.074 0.926 20 H 0.098 0.902 21 H 0.044 0.956 22 H 0.080 0.920 23 H 0.121 0.879 24 H 0.134 0.866 25 H 0.231 0.769 26 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.909 -7.071 -1.296 7.755 hybrid contribution -0.115 1.023 0.207 1.050 sum -3.023 -6.048 -1.088 6.849 Atomic orbital electron populations 1.21573 0.81094 1.00353 1.00763 1.43529 1.05454 1.04412 1.62748 1.19602 1.00763 0.83804 1.39244 0.88424 1.25354 0.96583 1.00226 0.94915 1.69962 1.19134 1.29975 1.33000 0.85955 0.79098 0.80625 0.78812 1.19799 1.20854 1.19715 1.19852 0.88454 0.84383 0.85546 1.90615 1.13282 1.86187 1.54288 1.21717 0.89418 0.85120 1.04881 1.50042 1.24024 1.19453 1.20727 1.25922 0.97416 0.85885 0.96068 1.70439 1.10102 1.31738 1.15944 1.25906 1.00982 0.91860 0.93975 1.78191 1.00817 1.17374 1.14536 0.92642 0.90250 0.95608 0.92033 0.87917 0.86555 0.76871 0.77213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.15 8.44 59.85 0.51 2.66 15 2 N -0.44 -10.84 3.01 -122.19 -0.37 -11.20 15 3 C -0.31 -8.38 9.24 -14.93 -0.14 -8.51 15 4 H 0.10 2.84 7.45 -52.49 -0.39 2.45 15 5 C 0.03 0.84 5.04 -17.47 -0.09 0.76 15 6 N -0.88 -22.63 10.83 55.50 0.60 -22.03 15 7 Si 0.93 20.41 29.57 -169.99 -5.03 15.38 15 8 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 11 C 0.43 10.24 7.66 -10.98 -0.08 10.16 15 12 O -0.56 -15.87 15.44 5.55 0.09 -15.78 15 13 C 0.11 1.96 5.64 -5.19 -0.03 1.93 15 14 N -0.35 -6.36 3.41 -63.81 -0.22 -6.58 15 15 C 0.24 3.71 12.63 -90.65 -1.14 2.57 15 16 N -0.55 -9.31 11.19 -15.83 -0.18 -9.48 15 17 C 0.18 2.99 13.03 -91.81 -1.20 1.79 15 18 N -0.28 -5.66 11.80 29.29 0.35 -5.31 15 19 H 0.06 1.13 7.83 -51.93 -0.41 0.73 15 20 H 0.08 1.74 6.80 -51.93 -0.35 1.39 15 21 H 0.03 0.41 6.61 -51.93 -0.34 0.07 15 22 H 0.27 6.58 8.31 -40.82 -0.34 6.24 15 23 H 0.10 1.53 7.41 -51.93 -0.38 1.14 15 24 H 0.12 1.55 8.05 -51.93 -0.42 1.13 15 25 H 0.21 2.13 8.06 -52.49 -0.42 1.71 15 26 H 0.21 2.69 8.06 -52.49 -0.42 2.27 15 LS Contribution 236.84 15.07 3.57 3.57 Total: -1.00 -34.16 236.84 -5.64 -39.80 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -2.28 Total: 0.28 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -2.18 Total: 11.35 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.18 Total: -54.60 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.09 Total: -15.78 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -34.16 -5.64 -39.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227422300.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.450 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds