Wall clock time and date at job start Sun Mar 29 2020 21:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37095 * 120.00208 * 2 1 4 4 H 1.08000 * 120.00459 * 204.39698 * 3 2 1 5 5 C 1.38951 * 119.99981 * 24.39170 * 3 2 1 6 6 N 1.31412 * 119.99823 * 12.64731 * 5 3 2 7 7 Si 1.86802 * 120.00019 * 192.64732 * 5 3 2 8 8 H 1.48495 * 109.47038 * 60.00075 * 7 5 3 9 9 H 1.48504 * 109.46991 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47061 * 300.00263 * 7 5 3 11 11 C 1.34778 * 120.00104 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00249 * 179.97438 * 11 2 1 13 13 C 1.50700 * 119.99576 * 359.97438 * 11 2 1 14 14 N 1.46505 * 109.46934 * 180.02562 * 13 11 2 15 15 C 1.34429 * 126.82050 * 125.00556 * 14 13 11 16 16 N 1.30834 * 108.07245 * 179.97438 * 15 14 13 17 17 C 1.33242 * 109.83418 * 359.97438 * 16 15 14 18 18 N 1.30717 * 108.94331 * 0.26474 * 17 16 15 19 19 H 1.09003 * 109.46975 * 265.86699 * 1 2 3 20 20 H 1.09004 * 109.47230 * 25.86058 * 1 2 3 21 21 H 1.08999 * 109.47459 * 145.86824 * 1 2 3 22 22 H 0.96997 * 119.99800 * 179.97438 * 6 5 3 23 23 H 1.08998 * 109.47202 * 60.00224 * 13 11 2 24 24 H 1.08995 * 109.47410 * 300.00014 * 13 11 2 25 25 H 1.07991 * 125.96252 * 359.96789 * 15 14 13 26 26 H 1.07993 * 125.53078 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2291 -0.3863 5 6 1.5488 2.3369 0.4970 6 7 0.4346 2.2491 1.1882 7 14 2.3237 4.0073 0.1825 8 1 2.4039 4.2481 -1.2806 9 1 1.4939 5.0647 0.8140 10 1 3.6895 4.0368 0.7646 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 7 2.3373 -3.5858 -0.0005 15 6 2.3916 -4.5993 0.8809 16 7 3.3797 -5.3846 0.5362 17 6 3.9764 -4.9077 -0.5555 18 7 3.3771 -3.8043 -0.9190 19 1 -0.3633 -0.0741 1.0250 20 1 -0.3634 0.9248 -0.4483 21 1 -0.3634 -0.8506 -0.5766 22 1 0.0148 3.0516 1.5354 23 1 0.7583 -2.5298 -0.8903 24 1 0.7590 -2.5302 0.8896 25 1 1.7344 -4.7406 1.7261 26 1 4.8208 -5.3575 -1.0564 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227422300.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:15 Heat of formation + Delta-G solvation = 50.718226 kcal Electronic energy + Delta-G solvation = -13592.826682 eV Core-core repulsion = 11094.651104 eV Total energy + Delta-G solvation = -2498.175578 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.90970 -40.31092 -36.75733 -34.83884 -33.63786 -32.09475 -29.46853 -27.91014 -26.16170 -23.23723 -22.80606 -20.91058 -18.93017 -18.27811 -17.83253 -16.75800 -16.55715 -16.05782 -15.78778 -15.43875 -14.91959 -14.17470 -14.09248 -13.47618 -13.25827 -13.13830 -12.71763 -12.67480 -12.35227 -12.15759 -11.05724 -11.01292 -10.94135 -10.69352 -10.21666 -9.70104 -8.38615 -6.03094 0.79644 1.36167 1.39374 1.44260 1.50632 1.93601 2.09052 2.25322 2.93570 3.04233 3.56507 3.70605 3.95565 4.11174 4.17878 4.48556 4.65690 5.04237 5.29464 5.38972 5.41377 5.58100 5.90975 6.08915 6.44615 7.12810 7.18803 7.39341 7.95448 8.63628 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.066490 B = 0.007780 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.012062 B = 3597.910758 C = 3861.253479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.456 5.456 3 C -0.346 4.346 4 H 0.063 0.937 5 C 0.005 3.995 6 N -0.889 5.889 7 Si 0.984 3.016 8 H -0.269 1.269 9 H -0.266 1.266 10 H -0.281 1.281 11 C 0.421 3.579 12 O -0.620 6.620 13 C 0.127 3.873 14 N -0.369 5.369 15 C 0.257 3.743 16 N -0.573 5.573 17 C 0.179 3.821 18 N -0.340 5.340 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.076 0.924 22 H 0.276 0.724 23 H 0.129 0.871 24 H 0.163 0.837 25 H 0.266 0.734 26 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 -8.119 -0.346 9.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.176 5.176 3 C -0.474 4.474 4 H 0.081 0.919 5 C -0.198 4.198 6 N -0.527 5.527 7 Si 0.808 3.192 8 H -0.194 1.194 9 H -0.191 1.191 10 H -0.207 1.207 11 C 0.209 3.791 12 O -0.506 6.506 13 C 0.002 3.998 14 N -0.160 5.160 15 C -0.038 4.038 16 N -0.301 5.301 17 C -0.124 4.124 18 N -0.168 5.168 19 H 0.073 0.927 20 H 0.076 0.924 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.147 0.853 24 H 0.181 0.819 25 H 0.281 0.719 26 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.514 -7.755 -0.707 9.000 hybrid contribution 0.374 1.178 0.065 1.237 sum -4.140 -6.577 -0.641 7.798 Atomic orbital electron populations 1.21612 0.78617 1.01489 1.01407 1.43793 1.07048 1.04095 1.62645 1.19462 1.00345 0.86178 1.41399 0.91897 1.25974 0.96993 1.02572 0.94212 1.70005 1.19309 1.30985 1.32420 0.85135 0.77981 0.77223 0.78836 1.19376 1.19066 1.20663 1.20962 0.88275 0.86292 0.83597 1.90574 1.16124 1.87472 1.56389 1.21762 0.88646 0.81056 1.08340 1.50117 1.24252 1.20303 1.21304 1.26981 0.96828 0.84173 0.95858 1.70498 1.10960 1.32541 1.16145 1.26536 1.01054 0.90953 0.93839 1.78123 1.02737 1.19118 1.16796 0.92691 0.92378 0.90577 0.91467 0.85285 0.81934 0.71853 0.74479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.32 8.44 127.77 1.08 5.40 15 2 N -0.46 -22.34 3.01 -658.89 -1.98 -24.33 15 3 C -0.35 -19.37 9.24 84.04 0.78 -18.59 15 4 H 0.06 3.87 7.45 -2.91 -0.02 3.85 15 5 C 0.01 0.27 5.04 84.93 0.43 0.70 15 6 N -0.89 -44.92 10.83 21.66 0.23 -44.68 15 7 Si 0.98 41.86 29.57 68.60 2.03 43.89 15 8 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 9 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 11 C 0.42 19.82 7.66 87.66 0.67 20.49 15 12 O -0.62 -35.98 15.44 -3.06 -0.05 -36.03 15 13 C 0.13 3.97 5.64 85.63 0.48 4.46 15 14 N -0.37 -12.56 3.41 -355.81 -1.21 -13.77 15 15 C 0.26 7.03 12.63 180.36 2.28 9.30 15 16 N -0.57 -18.03 11.19 -204.01 -2.28 -20.31 15 17 C 0.18 5.89 13.03 180.76 2.36 8.25 15 18 N -0.34 -13.48 11.80 -61.25 -0.72 -14.20 15 19 H 0.05 2.12 7.83 -2.39 -0.02 2.10 15 20 H 0.06 2.49 6.80 -2.38 -0.02 2.47 15 21 H 0.08 2.14 6.61 -2.39 -0.02 2.13 15 22 H 0.28 13.07 8.31 -92.71 -0.77 12.30 15 23 H 0.13 3.35 7.41 -2.39 -0.02 3.33 15 24 H 0.16 3.52 8.05 -2.39 -0.02 3.50 15 25 H 0.27 3.92 8.06 -2.92 -0.02 3.90 15 26 H 0.24 5.84 8.06 -2.91 -0.02 5.82 15 Total: -1.00 -77.20 236.84 5.28 -71.92 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.19 Total: 7.51 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: 8.07 Total: 30.01 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -5.97 Total: -117.30 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.05 Total: -36.03 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -77.20 5.28 -71.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227422300.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.640 kcal (2) G-P(sol) polarization free energy of solvation -77.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds